get mutation frequency
a list of data frame with mutation data. Each data frame is for one study
file name of geneList examples: "73"
a data frame with mutation frequency. gene is in rows and study is in column
cgds <- CGDS("http://www.cbioportal.org/public-portal/")
## Not run:
geneList <- whichGeneList("73")
r_data <- new.env()
MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
"gbm_tcga_pub_mutations", geneList )
FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")
## End(Not run)
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