get mutation frequency

Share:

Description

get mutation frequency

Usage

1
getFreqMutData(list, geneListLabel)

Arguments

list

a list of data frame with mutation data. Each data frame is for one study

geneListLabel

file name of geneList examples: "73"

Value

a data frame with mutation frequency. gene is in rows and study is in column

Examples

1
2
3
4
5
6
7
8
9
cgds <- CGDS("http://www.cbioportal.org/public-portal/")
## Not run: 
geneList <- whichGeneList("73")
r_data <- new.env()
MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
 "gbm_tcga_pub_mutations", geneList )
FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")

## End(Not run)

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.