Node_obj_Met_ProfData: Attribute gene Methylation to Nodes

In bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Description

Attribute gene Methylation to Nodes

Usage

Node_obj_Met_ProfData(list, type, threshold)

Arguments

list	a list of data frame with methylation data
type	HM450 or HM27
threshold	the Rate cases (patients) that have a silencing genes by methylation

Value

a data frame with node shape attributes

Examples

cgds <- CGDS("http://www.cbioportal.org/")
## Not run: 
GeneList <- whichGeneList("DNA_damage_Response")
ProfDataMET <- cgdsr::getProfileData(cgds,GeneList, "gbm_tcga_pub_methylation","gbm_tcga_pub_all")
ListProfDataMET <- list(ls1=ProfDataMET, ls2=ProfDataMET)
nodeObj <- Node_obj_Met_ProfData(ListProfDataMET, "HM450",0.1)

## End(Not run)

bioCancer documentation built on Nov. 8, 2020, 6:26 p.m.