Node_obj_Met_ProfData: Attribute gene Methylation to Nodes

Description Usage Arguments Value Examples

View source: R/Reactome.R

Description

Attribute gene Methylation to Nodes

Usage

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Arguments

list

a list of data frame with methylation data

type

HM450 or HM27

threshold

the Rate cases (patients) that have a silencing genes by methylation

Value

a data frame with node shape attributes

Examples

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cgds <- CGDS("http://www.cbioportal.org/public-portal/")
## Not run: 
GeneList <- whichGeneList("DNA_damage_Response")
ProfDataMET <- cgdsr::getProfileData(cgds,GeneList, "gbm_tcga_pub_methylation","gbm_tcga_pub_all")
ListProfDataMET <- list(ls1=ProfDataMET, ls2=ProfDataMET)
nodeObj <- Node_obj_Met_ProfData(ListProfDataMET, "HM450",0.1)

## End(Not run)

bioCancer documentation built on Nov. 17, 2017, 9:10 a.m.