getGenesClassification: get genes classification

In bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Description

get genes classification

Usage

getGenesClassification(checked_Studies, GeneList,
 samplesize, threshold, listGenProfs, listCases)

Arguments

checked_Studies	checked studies
GeneList	gene list
samplesize	sample size
threshold	p-value threshold
listGenProfs	list of genetic profiles
listCases	list of cases

Value

A table with genes classed by study

Examples

cgds <- CGDS("http://www.cbioportal.org/")
listStudies <-  cgdsr::getCancerStudies(cgds)
## Not run: 
checked_Stdudies <- listStudies[3:5]
listCases <- getList_Cases(listStudies[1:3])
listGenProfs <- getList_GenProfs(listStudies[1:3])
GeneList <- c('P53', 'IFI16', 'BRCA1')
samplesize <- 50
threshold <- 0.95
table <- getGenesClassification(checked_Studies, GeneList,
samplesize  ,threshold  ,listGenProfs, listCases)

## End(Not run)

bioCancer documentation built on Nov. 8, 2020, 6:26 p.m.