Files in bioCancer
Interactive Multi-Omics Cancers Data Visualization and Analysis
bioCancer.Rproj
README.md
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/user_mRNA.rda
data/user_MetHM450.rda
data/user_Mut.rda
data/user_MetHM27.rda
data/user_CNA.rda
data/epiGenomics.rda
R/switchButton.R
R/geNetClassifier.R
R/coffeewheel.R
R/aaa.R
R/getMegaProfData.R
R/Portal.R
R/radiant.R
R/dyNetwork.R
R/metabologram.R
R/phantomJS.R
R/bioCancer.R
R/Enrich.R
R/getListProfData.R
R/Reactome.R
vignettes/bioCancer.Rmd
vignettes/figures/join_superheroes_publishers.png
vignettes/figures/compareClusterDO.png
vignettes/figures/right_join.png
vignettes/figures/anti_join.png
vignettes/figures/80x15.png
vignettes/figures/inner_join.png
vignettes/figures/Reactome_Network.png
vignettes/figures/boxplot.png
vignettes/figures/explore.png
vignettes/figures/Classifier_Table.png
vignettes/figures/join_publishers_superheroes.png
vignettes/figures/pivotr.png
vignettes/figures/ReactomeLegend.png
vignettes/figures/merge_publishers_heroes.png
vignettes/figures/compareClusterKEGG.png
vignettes/figures/left_join.png
vignettes/figures/Plot_enrich.png
vignettes/figures/compareClusterGO.png
vignettes/figures/merge_heroes_publishers.png
vignettes/figures/full_join.png
vignettes/figures/combine_avengers_superheroes.png
vignettes/figures/overview_methods.png
vignettes/figures/outer_join.png
man/metabologramOutput.Rd
man/returnTextAreaInput.Rd
man/Node_df_FreqIn.Rd
man/getGenesClassification.Rd
man/grepRef.Rd
man/attriColorVector.Rd
man/user_MetHM450.Rd
man/getListProfData.Rd
man/getMegaProfData.Rd
man/Edges_Diseases_obj.Rd
man/renderMetabologram.Rd
man/whichGeneList.Rd
man/attriShape2Gene.Rd
man/renderCoffeewheel.Rd
man/metabologram.Rd
man/user_CNA.Rd
man/user_Mut.Rd
man/getFreqMutData.Rd
man/reStrDimension.Rd
man/reStrDisease.Rd
man/findPhantom.Rd
man/Node_obj_mRNA_Classifier.Rd
man/bioCancer.Rd
man/Node_Diseases_obj.Rd
man/reStrColorGene.Rd
man/displayTable.Rd
man/user_mRNA.Rd
man/attriColorGene.Rd
man/Mutation_obj.Rd
man/Node_obj_FreqIn.Rd
man/getList_Cases.Rd
man/Node_obj_Met_ProfData.Rd
man/epiGenomics.Rd
man/Node_obj_CNA_ProfData.Rd
man/switchButton.Rd
man/widgetThumbnail.Rd
man/getSequensed_SampleSize.Rd
man/coffeewheel.Rd
man/UnifyRowNames.Rd
man/user_MetHM27.Rd
man/Studies_obj.Rd
man/checkDimensions.Rd
man/attriColorValue.Rd
man/coffeewheelOutput.Rd
man/attriShape2Node.Rd
man/getList_GenProfs.Rd
tests/testthat.R
tests/testthat/test_funs.R
inst/doc/bioCancer.Rmd
inst/doc/bioCancer.html
inst/doc/bioCancer.R
inst/extdata/ReactomeFI2018.RDS
inst/extdata/ReactomeFI2017.RDS
inst/extdata/imgs/ReactomeLegend.png
inst/extdata/imgs/drawing.svg
inst/extdata/imgs/CircosLegend.png
inst/extdata/GeneList/555_genes.txt
inst/extdata/GeneList/Invasion_and_Metastasis.txt
inst/extdata/GeneList/102_genes.txt
inst/extdata/GeneList/1021_genes.txt
inst/extdata/GeneList/Glioblastoma_RTK_Ras_PI3K_AKT_Signaling.txt
inst/extdata/GeneList/ProstateCancer_DownRegulated_by_Androgen.txt
inst/extdata/GeneList/223_genes.txt
inst/extdata/GeneList/ProstateCancer_AR_and_Steroid_synthesis_enzymes.txt
inst/extdata/GeneList/73_genes.txt
inst/extdata/GeneList/DNA_damage_Response.txt
inst/htmlwidgets/metabologram.yaml
inst/htmlwidgets/d3-metabologram.js
inst/htmlwidgets/d3.min.js
inst/htmlwidgets/metabologram.js
inst/htmlwidgets/coffeewheel.yaml
inst/htmlwidgets/coffeewheel.js
inst/htmlwidgets/jquery-2.1.3.min.js
inst/htmlwidgets/d3-coffeewheel.js
inst/htmlwidgets/tooltipster/jquery.tooltipster.min.js
inst/htmlwidgets/tooltipster/tooltipster.css
inst/app/radiant_old.R
inst/app/help.R
inst/app/ui.R
inst/app/init.R
inst/app/server.R
inst/app/global.R
inst/app/www/switchButton.css
inst/app/www/style.css
inst/app/www/logo/80x15.png
inst/app/www/logo/icon.png
inst/app/www/logo/icon_copy.png
inst/app/tools/bioCancer/Reactome_ui.R
inst/app/tools/bioCancer/Network.R
inst/app/tools/bioCancer/cbindna.R
inst/app/tools/bioCancer/Network_ui.R
inst/app/tools/bioCancer/ProfData.R
inst/app/tools/bioCancer/Circomics_ui.R
inst/app/tools/bioCancer/Classifier.R
inst/app/tools/bioCancer/cBioPortal_ui.R
inst/app/tools/bioCancer/Mutation.R
inst/app/tools/bioCancer/reactiveFunctions.R
inst/app/tools/bioCancer/Enrichment_ui.R
inst/app/tools/bioCancer/cBioPortal.R
inst/app/tools/bioCancer/ClinicalData_ui.R
inst/app/tools/bioCancer/Classifier_ui.R
inst/app/tools/bioCancer/Mutation_ui.R
inst/app/tools/bioCancer/data_ui.R
inst/app/tools/bioCancer/Tools_ui.R
inst/app/tools/bioCancer/rbindna.R
inst/app/tools/bioCancer/ClinicalData.R
inst/app/tools/bioCancer/Studies.R
inst/app/tools/bioCancer/getCircomics.R
inst/app/tools/bioCancer/getReactomeFUN.R
inst/app/tools/bioCancer/Reactome.R
inst/app/tools/bioCancer/ProfData_ui.R
inst/app/tools/help/Regroup.Rmd
inst/app/tools/help/Mutation.md
inst/app/tools/help/view.md
inst/app/tools/help/Classifier.md
inst/app/tools/help/manage.md
inst/app/tools/help/visualize.md
inst/app/tools/help/Studies.md
inst/app/tools/help/combine.Rmd
inst/app/tools/help/Clinical.md
inst/app/tools/help/Statistics.md
inst/app/tools/help/state.md
inst/app/tools/help/Reactome.Rmd
inst/app/tools/help/Plots.md
inst/app/tools/help/Profiles.md
inst/app/tools/help/pivotr.md
inst/app/tools/help/report.md
inst/app/tools/help/quit.md
inst/app/tools/help/code.md
inst/app/tools/help/explore.md
inst/app/tools/help/transform.md
inst/app/tools/help/combine.md
inst/app/tools/help/Circomics.md
inst/app/tools/help/about.md
inst/app/tools/help/figures/Circomics_Availibility.png
inst/app/tools/help/figures/join_superheroes_publishers.png
inst/app/tools/help/figures/compareClusterDO.png
inst/app/tools/help/figures/right_join.png
inst/app/tools/help/figures/anti_join.png
inst/app/tools/help/figures/80x15.png
inst/app/tools/help/figures/inner_join.png
inst/app/tools/help/figures/Circomics.png
inst/app/tools/help/figures/Reactome_Network.png
inst/app/tools/help/figures/boxplot.png
inst/app/tools/help/figures/explore.png
inst/app/tools/help/figures/Classifier_Table.png
inst/app/tools/help/figures/join_publishers_superheroes.png
inst/app/tools/help/figures/pivotr.png
inst/app/tools/help/figures/ReactomeLegend.png
inst/app/tools/help/figures/merge_publishers_heroes.png
inst/app/tools/help/figures/compareClusterKEGG.png
inst/app/tools/help/figures/left_join.png
inst/app/tools/help/figures/Plot_enrich.png
inst/app/tools/help/figures/compareClusterGO.png
inst/app/tools/help/figures/merge_heroes_publishers.png
inst/app/tools/help/figures/full_join.png
inst/app/tools/help/figures/combine_avengers_superheroes.png
inst/app/tools/help/figures/overview_methods.png
inst/app/tools/help/figures/outer_join.png
