Mutation_obj: Atribute mutation frequency to nodes

In bioCancer: Interactive Multi-Omics Cancers Data Visualization and Analysis

Description

Atribute mutation frequency to nodes

Usage

Mutation_obj(list,FreqMutThreshold, geneListLabel)

Arguments

list	A list of data frame with mutation data. Each data frame to study
FreqMutThreshold	threshold Rate of cases (patients) having mutation (0-1).
geneListLabel	file name of geneList examples: "73"

Value

A dat frame with mutation frequency. Ech column corresponds to a study.

Examples

 cgds <- CGDS("http://www.cbioportal.org/")
 ## Not run: 
 geneList <- whichGeneList("73")
 MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
 "gbm_tcga_pub_mutations", geneList )
 listMutData <- list(ls1=MutData, ls2=MutData)
 FreqMutThreshold <- 10
 r_data <- new.env()
 MutObj <- Mutation_obj(listMutData, 10, "73")
 
## End(Not run)

bioCancer documentation built on Nov. 8, 2020, 6:26 p.m.