Bioconductor/VCFArray: Representing on-disk / remote VCF files as array-like objects

VCFArray extends the DelayedArray to represent VCF data entries as array-like objects with on-disk / remote VCF file as backend. Data entries from VCF files, including info fields, FORMAT fields, and the fixed columns (REF, ALT, QUAL, FILTER) could be converted into VCFArray instances with different dimensions.

Getting started

Package details

Bioconductor views DataRepresentation Infrastructure Sequencing VariantAnnotation
Maintainer
LicenseGPL-3
Version0.99.18
URL https://github.com/Liubuntu/VCFArray
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor/VCFArray")
Bioconductor/VCFArray documentation built on Dec. 14, 2018, 4:12 p.m.