The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.
|Author||Jason A. Hackney, Melanie Huntley, Jessica L. Larson, Christina Chaivorapol, Gabriel Becker, and Josh Kaminker|
|Date of publication||None|
|Maintainer||Jason A. Hackney <firstname.lastname@example.org>, Gabriel Becker <email@example.com>, Jessica L. Larson <firstname.lastname@example.org>|
addReportColumns-methods: Decorate the Basic data.frame Representation of an Object
BaseReportType-class: Class '"BaseReport"'
CSVFile: Function for creating and initializing a CSVFile for...
CSVFile-class: Class '"CSVFile"'
custHeaderPanel: Define a header panel with custom JS/CSS for a Shiny app
DataPackage: Function for creating and initializing an object of class...
DataPackage-class: Class '"DataPackage"'
filename-methods: Methods for getting the name of a file for a CSVFile or...
finish-methods: Finalizing reports after publishing results
HTMLReport: Creating and initializing an HTMLReport object
HTMLReport-class: Class '"HTMLReport"'
Link: Create a table of Links
makeDESeqDF: Converts DESeq results into a data frame to be published
mockRnaSeqData: A counts table of mock RNA-deq data in mouse.
objectToHTML-methods: Transform R objects into HTML form to be inserted in HTML...
publish-methods: Methods for publishing a variety of data types in selected...
readReport: Read in an Existing Report
ReportHandlers-class: Class '"ReportHandlers"'
reporting.theme: Color theme for use in ReportingTools
reporting.theme.alternate: Alternate color theme for use in ReportingTools
toReportDF-methods: Class Specific Default Behavior for Transforming Objects to...
validConnection: Determine connection validity