MultiAssayExperiment: Software for the integration of multi-omics experiments in Bioconductor

MultiAssayExperiment harmonizes data management of multiple experimental assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames. Facilities are provided for reshaping data into wide and long formats for adaptability to graphing and downstream analysis.

Package details

AuthorMarcel Ramos [aut, cre], Levi Waldron [aut], MultiAssay SIG [ctb]
Bioconductor views DataRepresentation Infrastructure
MaintainerMarcel Ramos <marcel.ramos@roswellpark.org>
LicenseArtistic-2.0
Version1.16.0
URL http://waldronlab.io/MultiAssayExperiment/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiAssayExperiment")

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MultiAssayExperiment documentation built on Nov. 8, 2020, 8:10 p.m.