API for MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor

Global functions
$,MultiAssayExperiment-method Man page
$<-,MultiAssayExperiment-method Man page
API Man page Source code
DollarNames.MultiAssayExperiment Source code
ExperimentList Man page
ExperimentList,ANY-method Man page
ExperimentList,missing-method Man page
ExperimentList-class Man page
MatchedAssayExperiment Man page Source code
MatchedAssayExperiment-class Man page
MultiAssayExperiment Man page Source code
MultiAssayExperiment-class Man page
MultiAssayExperiment-helpers Man page
MultiAssayExperiment-methods Man page
RangedBracketSubsetRRA Source code
RangedRaggedAssay Man page Source code
RangedRaggedAssay-class Man page
[,MultiAssayExperiment,ANY,ANY,ANY-method Man page
[,MultiAssayExperiment,ANY-method Man page
[,RangedRaggedAssay,ANY,ANY,ANY-method Man page
[,RangedRaggedAssay,ANY-method Man page
[,RangedRaggedAssay,GRanges,ANY,ANY-method Man page
[,RangedRaggedAssay,GRanges-method Man page
[[,MultiAssayExperiment,ANY,ANY-method Man page
[[<-,MultiAssayExperiment,ANY,ANY-method Man page
allIn Source code
apiDash Source code
assay,ANY,missing-method Man page
assay,ExperimentList,character-method Man page
assay,ExperimentList,missing-method Man page Man page
assay,ExperimentList,numeric-method Man page
assay,MultiAssayExperiment,character-method Man page
assay,MultiAssayExperiment,missing-method Man page
assay,MultiAssayExperiment,numeric-method Man page
assay,RangedRaggedAssay,missing-method Man page
assays,ExperimentList-method Man page
assays,MultiAssayExperiment-method Man page
c,MultiAssayExperiment-method Man page
checkEqualPrimaries Source code
checkExperimentList Source code
checkExperimentListNames Source code
checkGRL Source code
checkMethodsTable Source code
checkOverlapsAny Source code
checkPrimaryOrder Source code
checkSampleMapNamesClass Source code
checkSampleNames Source code
cleanC Source code
cleanT Source code
clusterOn Man page Source code
colData,MultiAssayExperiment-method Man page
colData<-,MultiAssayExperiment,DataFrame-method Man page
complete.cases,MultiAssayExperiment-method Man page
dim,RangedRaggedAssay-method Man page
dimnames,ExperimentList-method Man page
dimnames,MultiAssayExperiment-method Man page
dimnames,RangedRaggedAssay-method Man page
dimnames<-,RangedRaggedAssay,list-method Man page
disjoin,RangedRaggedAssay-method Man page
duplicated Man page
duplicated,MultiAssayExperiment-method Man page
experiments Man page
experiments,MultiAssayExperiment-method Man page
experiments<- Man page
experiments<-,MultiAssayExperiment,ExperimentList-method Man page
findNumericMcol Source code
generateMap Source code
getColNamesErr Source code
getHits Source code
getMethErr Source code
getRowNamesErr Source code
harmonize Source code
hasAssay Man page Source code
hasOldAPI Source code
intersectColumns Man page Man page Source code
intersectRows Man page Source code
isEmpty,MultiAssayExperiment-method Man page
length,MultiAssayExperiment-method Man page
listToMap Man page Source code
longFormat Man page
longFormat,ANY-method Man page
longFormat,ExperimentList-method Man page
longFormat,MultiAssayExperiment-method Man page
longFormat,RangedRaggedAssay-method Man page
mapToList Man page Source code
matchReorderSub Source code
mergeReplicates Man page Man page
mergeReplicates,ANY-method Man page
mergeReplicates,ExperimentList-method Man page
mergeReplicates,MultiAssayExperiment-method Man page
mergeReplicates,RangedRaggedAssay-method Man page
metadata,MultiAssayExperiment-method Man page
metadata<-,MultiAssayExperiment-method Man page
miniACC Man page
names,MultiAssayExperiment-method Man page
pData,MultiAssayExperiment-method Man page
pData<-,MultiAssayExperiment,DataFrame-method Man page
packageAPI Source code
prepMultiAssay Man page Source code
rearrangeMap Source code
rowIdx Source code
sBracketSubsetRRA Source code
sEmpty Source code
sampleMap Man page
sampleMap,MultiAssayExperiment-method Man page
sampleMap<- Man page
sampleMap<-,MultiAssayExperiment,DataFrame-method Man page
show,ExperimentList-method Man page
show,MultiAssayExperiment-method Man page
show,RangedRaggedAssay-method Man page
splitArgs Source code
subset Man page
subsetBy Man page
subsetByAssay Man page Man page
subsetByAssay,MultiAssayExperiment-method Man page
subsetByColData Man page Man page
subsetByColData,MultiAssayExperiment,ANY-method Man page
subsetByColData,MultiAssayExperiment,character-method Man page
subsetByColumn Man page
subsetByColumn,MultiAssayExperiment,List-method Man page
subsetByColumn,MultiAssayExperiment,list-method Man page
subsetByColumns Man page
subsetByRow Man page
subsetByRow,MultiAssayExperiment,ANY-method Man page
subsetByRow,MultiAssayExperiment,List-method Man page
subsetByRow,MultiAssayExperiment,list-method Man page
subsetByRow,MultiAssayExperiment,logical-method Man page
subsetByRows Man page
subsetMultiAssayExperiment Source code
uniqueNamesInAssays Source code
uniqueSortIdentical Source code
updateObject,MultiAssayExperiment-method Man page
upsetSamples Man page Source code
validExperimentList Source code
validMatchedAssayExperiment Source code
validMultiAssayExperiment Source code
wideFormat Man page
wideFormat,ANY-method Man page
wideFormat,ExperimentList-method Man page
wideFormat,MultiAssayExperiment-method Man page
MultiAssayExperiment documentation built on Dec. 1, 2017, 2 a.m.