interactiveDisplay: Package for enabling powerful shiny web displays of Bioconductor objects
Version 1.14.0

The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects.

AuthorShawn Balcome, Marc Carlson
Bioconductor views AnnotationData Classification DataRepresentation GO GUI GeneExpression Genetics Microarray Network QualityControl Sequencing Visualization
Date of publicationNone
MaintainerShawn Balcome <balc0022@umn.edu>
LicenseArtistic-2.0
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("interactiveDisplay")

Popular man pages

bicgo: bicgo: Open a Shiny Application for manual/interactive...
expr: An Example ExpressionSet object
interactiveDisplay-methods: display: Open a Shiny application for a Bioconductor object
mmgr: An Example GRanges Object
mmgrl: An Example GRangesList Object
se: An Example RangedSummarizedExperiment Object
simplenet: simplenet: Open a Shiny Application for ...
See all...

All man pages Function index File listing

Man pages

altgr: altgr: Open a Shiny Application for ...
bicgo: bicgo: Open a Shiny Application for manual/interactive...
expr: An Example ExpressionSet object
gridsvgjs: gridsvgjs: Open a Shiny Application for a Grid Plot
gridtweak: gridtweak: Open a Shiny Application for the purpose of...
interactiveDisplay-methods: display: Open a Shiny application for a Bioconductor object
mmgr: An Example GRanges Object
mmgrl: An Example GRangesList Object
se: An Example RangedSummarizedExperiment Object
simplenet: simplenet: Open a Shiny Application for ...

Functions

ES_setMainPanel Source code
ES_setSidebarPanel Source code
GL_setSidebarPanel Source code
GR_GRL_setMainPanel Source code
MGS_setMainPanel Source code
MGS_setSidebarPanel Source code
altgr Man page Source code
altgr,ANY-method Man page
bicgo Man page Source code
bicgo,ANY-method Man page
choose_gen Source code
csstags Source code
display Man page
display,ANY-method Man page
display,ExpressionSet-method Man page
display,GRanges-method Man page
display,GRangesList-method Man page
display,MRexperiment-method Man page
display,RangedSummarizedExperiment-method Man page
display,missing-method Man page
expr Man page
ggheat Source code
grid2jssvg Source code
gridsvgjs Man page
gridsvgjs,ANY-method Man page
gridtweak Man page
gridtweak,ANY-method Man page
heatcolor1 Source code
heatcolor2 Source code
heatcolor3 Source code
jstags Source code
loading_gif Source code
mmgr Man page
mmgrl Man page
onLoad Source code
se Man page
selDataTableOutput Source code
setSidebarPanel Source code
simplenet Man page Source code
simplenet,ANY-method Man page
subgr Source code
subgr2 Source code
svgcheckout Source code
usePackage Source code

Files

DESCRIPTION
NAMESPACE
R
R/ExpressionSet.R
R/GRanges.R
R/GRangesList.R
R/MRexperiment.R
R/SummarizedExperiment.R
R/altgr.R
R/bicgo.R
R/gridsvgjs.R
R/gridtweak.R
R/interactiveDisplay.R
R/simplenet.R
R/zzz.R
build
build/vignette.rds
data
data/expr.rda
data/mmgr.rda
data/mmgrl.rda
data/se.rda
inst
inst/doc
inst/doc/interactiveDisplay.R
inst/doc/interactiveDisplay.Rnw
inst/doc/interactiveDisplay.pdf
inst/www
inst/www/css
inst/www/css/interactiveDisplay.css
inst/www/js
inst/www/js/d3.v2.js
inst/www/js/demo.js
inst/www/js/editable.min.js
inst/www/js/graph.js
inst/www/js/jquery-svgpan.js
inst/www/js/jquery.dataTables.min.js
inst/www/js/jquery.dataTables.nightly.js
inst/www/js/jquery.js
inst/www/js/jquery.min.js
inst/www/js/jscolor
inst/www/js/jscolor/arrow.gif
inst/www/js/jscolor/cross.gif
inst/www/js/jscolor/hs.png
inst/www/js/jscolor/hv.png
inst/www/js/jscolor/jscolor.js
inst/www/js/shiny2.js
man
man/altgr.Rd
man/bicgo.Rd
man/expr.Rd
man/gridsvgjs.Rd
man/gridtweak.Rd
man/interactiveDisplay-methods.Rd
man/mmgr.Rd
man/mmgrl.Rd
man/se.Rd
man/simplenet.Rd
vignettes
vignettes/Bioconductor.sty
vignettes/images
vignettes/images/All_Ranges_in_Object.png
vignettes/images/Binned_Mean_Counts_by_Position.png
vignettes/images/Chosen_Probe_for_GO_Summary.png
vignettes/images/Dataframe_Table.png
vignettes/images/Dendrogram_Probes.png
vignettes/images/Dendrogram_Samples.png
vignettes/images/Deposit_Ranges_in_View_Clear_Deposit_Save_to_Console.png
vignettes/images/Deposited_Selections.png
vignettes/images/Dynamically_Created_Metadata_Tabs.png
vignettes/images/Experiment_Info.png
vignettes/images/Force_Layout_Charge_Force_Layout_Link_Distance.png
vignettes/images/GRange_Chromosome.png
vignettes/images/Group_Wide_GO_Summary_Group_Wide_Summary_Min_probe_pop_for_G.png
vignettes/images/Heat_Plot.png
vignettes/images/Heatmap_Color_Scale_Rainbow_Three_Color.png
vignettes/images/Individual_Probe_GO_Summary.png
vignettes/images/Interactive_Plot.png
vignettes/images/Network_Dendrogram_View_Sample_or_Probe.png
vignettes/images/Network_View_Probes.png
vignettes/images/Network_View_Samples.png
vignettes/images/Number_of_Clusters_Hierarchical_Clustering_Method_Distance_S.png
vignettes/images/Number_of_Edges_Distance_Threshold.png
vignettes/images/Plot_Window_Range_Length_Filter_Choose_a_Strand.png
vignettes/images/Probe_Cluster_GO_Summary.png
vignettes/images/Selected_Ranges_in_Current_View.png
vignettes/images/Show_Top_or_Bottom_Ranked_Based_On_Number_of_Probes_to_Displ.png
vignettes/images/Static_Circle_Layout.png
vignettes/images/Stop_Application.png
vignettes/images/Suppress_Heatmap_Transpose_Heatmap.png
vignettes/images/Tweak_Axis_Label_Font_Size.png
vignettes/images/UCSC_Genome_Suppress_Ideogram.png
vignettes/images/gridSVG.png
vignettes/images/simplenet.png
vignettes/images/summarizedExperimentUI.png
vignettes/interactiveDisplay.Rnw
vignettes/interactiveDisplay.bib
interactiveDisplay documentation built on May 20, 2017, 10:03 p.m.