SplicingGraphs: Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

Package details

AuthorD. Bindreither, M. Carlson, M. Morgan, H. Pagès
Bioconductor views AlternativeSplicing Annotation DataRepresentation GeneExpression Genetics ImmunoOncology RNASeq Sequencing Transcription Visualization
MaintainerH. Pagès <hpages.on.github@gmail.com>
URL https://bioconductor.org/packages/SplicingGraphs
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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SplicingGraphs documentation built on Nov. 8, 2020, 5:58 p.m.