Files in SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

TODO

.Rinstignore

NAMESPACE

DESCRIPTION

build/vignette.rds

R/sgraph-methods.R R/countReads-methods.R R/utils.R R/sgedges-methods.R R/plotTranscripts-methods.R R/assignReads.R R/bubbles-methods.R R/toy_data.R R/zzz.R R/sgedgesByGene-methods.R R/SplicingGraphs-class.R R/igraph-utils.R R/rsgedgesByGene-methods.R R/txpath-methods.R

vignettes/SplicingGraphs.Rnw

vignettes/images/ZNF813-sg.pdf vignettes/images/ZNF813-sg2.pdf vignettes/images/ZNF813-transcripts.pdf vignettes/images/CIB3-transcripts.pdf vignettes/images/CIB3-sg.pdf vignettes/images/CIB3-sg2.pdf

vignettes/precomputed_results/sg_with_bubbles.rda

vignettes/precomputed_results/sg_with_reads.rda

man/plotTranscripts-methods.Rd man/rsgedgesByGene-methods.Rd man/TSPCsg.Rd man/txpath-methods.Rd man/sgedges-methods.Rd man/countReads-methods.Rd man/assignReads.Rd man/bubbles-methods.Rd man/toy_data.Rd man/sgraph-methods.Rd man/sgedgesByGene-methods.Rd man/SplicingGraphs-class.Rd man/SplicingGraphs-package.Rd tests/run_unitTests.R inst/doc/SplicingGraphs.pdf

inst/doc/SplicingGraphs.Rnw

inst/doc/SplicingGraphs.R

inst/extdata/toy_reads.sam

inst/extdata/toy_overlaps.txt

inst/extdata/toy_genes.gff3

inst/extdata/TSPCsg.rda

inst/extdata/ASpatterns.txt

inst/scripts/TSPC-utils.R inst/scripts/create-vignette-plots.R inst/scripts/makeTSPCsg.R inst/unitTests/test_countReads-methods.R

SplicingGraphs documentation built on Nov. 8, 2020, 5:58 p.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Tweet to @rdrrHQ

GitHub issue tracker

ian@mutexlabs.com