BaseSpaceR: R SDK for BaseSpace RESTful API

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A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author
Adrian Alexa
Date of publication
None
Maintainer
Jared O'Connell <joconnell@illumina.com>
License
Apache License 2.0
Version
1.18.0

View on Bioconductor

Man pages

AppAuth-class
'AppAuth' class
AppResults-class
'AppResults' and '"AppResultsSummary"' objects
AppSessionAuth
'AppSessionAuth' class
AppSessions-class
'AppSessions' object
BaseSpaceR-package
R SDK for BaseSpace RESTful API
Coverage
Methods for accessing coverage data from BAM files
data-aAuth
Sample 'AppAuth' instance with 'browse global' scope
Error
Class '"ResponseStatus"'
Files-class
'Files' and 'FilesSummary' objects
FilesExtra
High-level methods for 'Files' objects and related
Genomes-class
'Genomes' and 'GenomesSummary' objects
private_methods
Internal methods
Projects-class
'Projects' and 'ProjectsSummary' objects
Response-class
'Item', 'Collection' and 'Response' objects
Runs-class
'Runs' and 'RunsSummary' objects
Samples-class
'Samples' and 'SamplesSummary' objects
ServiceURI-class
Class '"ServiceURI"'
Users-class
'Users' objects and resources
Variants
Methods for accessing varinant data

Files in this package

BaseSpaceR/DESCRIPTION
BaseSpaceR/NAMESPACE
BaseSpaceR/NEWS
BaseSpaceR/R
BaseSpaceR/R/AppAuth.R
BaseSpaceR/R/AppResults.R
BaseSpaceR/R/AppSessionAuth.R
BaseSpaceR/R/AppSessions.R
BaseSpaceR/R/Coverage.R
BaseSpaceR/R/Error.R
BaseSpaceR/R/Files.R
BaseSpaceR/R/Files_extra.R
BaseSpaceR/R/Genomes.R
BaseSpaceR/R/Href.R
BaseSpaceR/R/Projects.R
BaseSpaceR/R/Properties.R
BaseSpaceR/R/Response.R
BaseSpaceR/R/Runs.R
BaseSpaceR/R/Samples.R
BaseSpaceR/R/ServiceURI.R
BaseSpaceR/R/Users.R
BaseSpaceR/R/Variants.R
BaseSpaceR/R/generics.R
BaseSpaceR/R/misc.R
BaseSpaceR/R/zzz.R
BaseSpaceR/build
BaseSpaceR/build/vignette.rds
BaseSpaceR/data
BaseSpaceR/data/aAuth.rda
BaseSpaceR/inst
BaseSpaceR/inst/doc
BaseSpaceR/inst/doc/BaseSpaceR.R
BaseSpaceR/inst/doc/BaseSpaceR.Rnw
BaseSpaceR/inst/doc/BaseSpaceR.pdf
BaseSpaceR/inst/scripts
BaseSpaceR/inst/scripts/BaseSpaceR-QscoreApp.Rnw
BaseSpaceR/man
BaseSpaceR/man/AppAuth-class.Rd
BaseSpaceR/man/AppResults-class.Rd
BaseSpaceR/man/AppSessionAuth.Rd
BaseSpaceR/man/AppSessions-class.Rd
BaseSpaceR/man/BaseSpaceR-package.Rd
BaseSpaceR/man/Coverage.Rd
BaseSpaceR/man/Error.Rd
BaseSpaceR/man/Files-class.Rd
BaseSpaceR/man/FilesExtra.Rd
BaseSpaceR/man/Genomes-class.Rd
BaseSpaceR/man/Projects-class.Rd
BaseSpaceR/man/Response-class.Rd
BaseSpaceR/man/Runs-class.Rd
BaseSpaceR/man/Samples-class.Rd
BaseSpaceR/man/ServiceURI-class.Rd
BaseSpaceR/man/Users-class.Rd
BaseSpaceR/man/Variants.Rd
BaseSpaceR/man/data-aAuth.Rd
BaseSpaceR/man/private_methods.Rd
BaseSpaceR/vignettes
BaseSpaceR/vignettes/BaseSpaceR-QscoreApp.pdf
BaseSpaceR/vignettes/BaseSpaceR.Rnw