BaseSpaceR: R SDK for BaseSpace RESTful API

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

AuthorAdrian Alexa
Date of publicationNone
MaintainerJared O'Connell <joconnell@illumina.com>
LicenseApache License 2.0
Version1.18.0

View on Bioconductor

Functions

aAuth Man page
AppAuth Man page
AppAuth-class Man page
appResultCollection Man page
appResultCollection-class Man page
appResultItem Man page
appResultItem-class Man page
AppResults Man page
AppResults,AppAuth-method Man page
AppResults,AppResultsSummary-method Man page
AppResults-class Man page
AppResults,missing-method Man page
AppResultsSummary-class Man page
AppSessionAuth-class Man page
appSessionItem Man page
appSessionItem-class Man page
AppSessions Man page
AppSessions,AppAuth-method Man page
AppSessions,AppResults-method Man page
AppSessions-class Man page
as.character,staticHref-method Man page
as.list,Collection-method Man page
as.list,Item-method Man page
as.list,Response-method Man page
auth Man page
auth,Href-method Man page
authNativeClient Man page
auth,Response-method Man page
authWebClient Man page
BaseSpaceR Man page
BaseSpaceR-package Man page
Collection-class Man page
[,Collection-method Man page
$,Collection-method Man page
[[,Collection,numeric-method Man page
countAppResults Man page
countAppResults,AppAuth-method Man page
countAppResults,Projects-method Man page
countAppResults,ProjectsSummary-method Man page
countAppResults,Response-method Man page
countAppSessions Man page
countAppSessions,AppAuth-method Man page
countAppSessions,Response-method Man page
countFiles Man page
countFiles,AppAuth-method Man page
countFiles,AppResults-method Man page
countFiles,AppResultsSummary-method Man page
countFiles,Response-method Man page
countFiles,Runs-method Man page
countFiles,RunsSummary-method Man page
countFiles,Samples-method Man page
countFiles,SamplesSummary-method Man page
countGenomes Man page
countProjects Man page
countProjects,AppAuth-method Man page
countProjects,Response-method Man page
countRuns Man page
countRuns,AppAuth-method Man page
countRuns,Response-method Man page
countSamples Man page
countSamples,AppAuth-method Man page
countSamples,Projects-method Man page
countSamples,ProjectsSummary-method Man page
countSamples,Response-method Man page
createAppResults Man page
createAppResults,AppAuth-method Man page
createAppResults,Projects-method Man page
createProject Man page
createProject,AppAuth-method Man page
DateCreated Man page
DateCreated,Collection-method Man page
DateCreated,Item-method Man page
DateCreated,Response-method Man page
DisplayedCount Man page
DisplayedCount,Collection-method Man page
DisplayedCount,Item-method Man page
DisplayedCount,Response-method Man page
fileCollection Man page
fileCollection-class Man page
fileItem Man page
fileItem-class Man page
Files Man page
Files,AppAuth-method Man page
Files-class Man page
Files,FilesSummary-method Man page
Files,missing-method Man page
FilesSummary-class Man page
genomeCollection Man page
genomeCollection-class Man page
genomeItem Man page
genomeItem-class Man page
Genomes Man page
Genomes,AppAuth-method Man page
Genomes-class Man page
Genomes,GenomesSummary-method Man page
Genomes,missing-method Man page
GenomesSummary-class Man page
getBAMs Man page
getBAMs,AppResults-method Man page
getCoverage Man page
getCoverage,AppAuth-method Man page
getCoverageStats Man page
getCoverageStats,AppAuth-method Man page
getFiles Man page
getFiles,AppAuth-method Man page
getIndexedBam Man page
GET,ServiceURI-method Man page
getVariants Man page
getVariants,AppAuth-method Man page
getVariantSet Man page
getVariantSet,AppAuth-method Man page
hasAccess Man page
hasAccess,AppAuth-method Man page
Href Man page
HrefBaseSpaceUI Man page
HrefBaseSpaceUI,Collection-method Man page
HrefBaseSpaceUI,Item-method Man page
HrefBaseSpaceUI,Response-method Man page
Href,Collection-method Man page
Href,Item-method Man page
Href,Response-method Man page
Id Man page
Id,Collection-method Man page
Id,Item-method Man page
Id,Response-method Man page
initializeAuth Man page
initializeAuth,AppAuth-method Man page
Item-class Man page
$,Item-method Man page
Items Man page
Items,Collection-method Man page
Items,Item-method Man page
Items,Response-method Man page
length,Collection-method Man page
length,Item-method Man page
length,Response-method Man page
Limit Man page
Limit,Collection-method Man page
Limit,Item-method Man page
Limit,Response-method Man page
listAppResults Man page
listAppResults,AppAuth-method Man page
listAppResults,Projects-method Man page
listAppSessions Man page
listAppSessions,AppAuth-method Man page
listFiles Man page
listFiles,AppAuth-method Man page
listFiles,AppResults-method Man page
listFiles,AppResultsSummary-method Man page
listFiles,Runs-method Man page
listFiles,RunsSummary-method Man page
listFiles,Samples-method Man page
listFiles,SamplesSummary-method Man page
listGenomes Man page
listGenomes Man page
listGenomes,AppAuth-method Man page
listGenomes,AppAuth-method Man page
listGenomes,Response-method Man page
listProjects Man page
listProjects,AppAuth-method Man page
listProjects,Response-method Man page
listRuns Man page
listRuns,AppAuth-method Man page
listRuns,Response-method Man page
listSamples Man page
listSamples,AppAuth-method Man page
listSamples,Projects-method Man page
Name Man page
Name,Collection-method Man page
Name,Item-method Man page
Name,Response-method Man page
Offset Man page
Offset,Collection-method Man page
Offset,Item-method Man page
Offset,Response-method Man page
performOAuth Man page
POSTForm,ServiceURI-method Man page
POST,ServiceURI-method Man page
projectCollection Man page
projectCollection-class Man page
projectItem Man page
projectItem-class Man page
Projects Man page
Projects,AppAuth-method Man page
Projects-class Man page
Projects,missing-method Man page
Projects,ProjectsSummary-method Man page
ProjectsSummary-class Man page
putFiles Man page
putFiles,AppAuth-method Man page
requestAccessToken Man page
requestAccessToken,AppAuth-method Man page
Response Man page
[[,Response,ANY-method Man page
Response-class Man page
[,Response-method Man page
$,Response-method Man page
ResponseStatus Man page
ResponseStatus-class Man page
runCollection Man page
runCollection-class Man page
runItem Man page
runItem-class Man page
Runs Man page
Runs,AppAuth-method Man page
Runs-class Man page
Runs,missing-method Man page
Runs,RunsSummary-method Man page
RunsSummary-class Man page
sampleCollection Man page
sampleCollection-class Man page
sampleItem Man page
sampleItem-class Man page
Samples Man page
Samples,AppAuth-method Man page
Samples-class Man page
Samples,missing-method Man page
Samples,SamplesSummary-method Man page
SamplesSummary-class Man page
ServiceURI Man page
ServiceURI-class Man page
show,Collection-method Man page
show,Href-method Man page
show,Item-method Man page
show,Response-method Man page
show,ResponseStatus-method Man page
show,ServiceURI-method Man page
show,staticHref-method Man page
SortBy Man page
SortBy,Collection-method Man page
SortBy,Item-method Man page
SortBy,Response-method Man page
SortDir Man page
SortDir,Collection-method Man page
SortDir,Item-method Man page
SortDir,Response-method Man page
Status Man page
Status,Collection-method Man page
Status,Item-method Man page
Status,Response-method Man page
TotalCount Man page
TotalCount,Collection-method Man page
TotalCount,Item-method Man page
TotalCount,Response-method Man page
updateAppSessions Man page
updateAppSessions,AppAuth-method Man page
uri Man page
uri,ServiceURI-method Man page
userItem Man page
userItem-class Man page
UserOwnedBy Man page
UserOwnedBy,Collection-method Man page
UserOwnedBy,Item-method Man page
UserOwnedBy,Response-method Man page
Users Man page
Users Man page
Users,AppAuth-method Man page
Users-class Man page
Users,missing-method Man page
Users,Response-method Man page

Files

BaseSpaceR/DESCRIPTION
BaseSpaceR/NAMESPACE
BaseSpaceR/NEWS
BaseSpaceR/R
BaseSpaceR/R/AppAuth.R BaseSpaceR/R/AppResults.R BaseSpaceR/R/AppSessionAuth.R BaseSpaceR/R/AppSessions.R BaseSpaceR/R/Coverage.R BaseSpaceR/R/Error.R BaseSpaceR/R/Files.R BaseSpaceR/R/Files_extra.R BaseSpaceR/R/Genomes.R BaseSpaceR/R/Href.R BaseSpaceR/R/Projects.R BaseSpaceR/R/Properties.R BaseSpaceR/R/Response.R BaseSpaceR/R/Runs.R BaseSpaceR/R/Samples.R BaseSpaceR/R/ServiceURI.R BaseSpaceR/R/Users.R BaseSpaceR/R/Variants.R BaseSpaceR/R/generics.R BaseSpaceR/R/misc.R BaseSpaceR/R/zzz.R
BaseSpaceR/build
BaseSpaceR/build/vignette.rds
BaseSpaceR/data
BaseSpaceR/data/aAuth.rda
BaseSpaceR/inst
BaseSpaceR/inst/doc
BaseSpaceR/inst/doc/BaseSpaceR.R
BaseSpaceR/inst/doc/BaseSpaceR.Rnw
BaseSpaceR/inst/doc/BaseSpaceR.pdf
BaseSpaceR/inst/scripts
BaseSpaceR/inst/scripts/BaseSpaceR-QscoreApp.Rnw
BaseSpaceR/man
BaseSpaceR/man/AppAuth-class.Rd BaseSpaceR/man/AppResults-class.Rd BaseSpaceR/man/AppSessionAuth.Rd BaseSpaceR/man/AppSessions-class.Rd BaseSpaceR/man/BaseSpaceR-package.Rd BaseSpaceR/man/Coverage.Rd BaseSpaceR/man/Error.Rd BaseSpaceR/man/Files-class.Rd BaseSpaceR/man/FilesExtra.Rd BaseSpaceR/man/Genomes-class.Rd BaseSpaceR/man/Projects-class.Rd BaseSpaceR/man/Response-class.Rd BaseSpaceR/man/Runs-class.Rd BaseSpaceR/man/Samples-class.Rd BaseSpaceR/man/ServiceURI-class.Rd BaseSpaceR/man/Users-class.Rd BaseSpaceR/man/Variants.Rd BaseSpaceR/man/data-aAuth.Rd BaseSpaceR/man/private_methods.Rd
BaseSpaceR/vignettes
BaseSpaceR/vignettes/BaseSpaceR-QscoreApp.pdf
BaseSpaceR/vignettes/BaseSpaceR.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.