API for BaseSpaceR
R SDK for BaseSpace RESTful API

Global functions
$,Collection-method Man page
$,Item-method Man page
$,Response-method Man page
AppAuth Man page Source code
AppAuth-class Man page
AppResults Man page
AppResults,AppAuth-method Man page
AppResults,AppResultsSummary-method Man page
AppResults,missing-method Man page
AppResults-class Man page
AppResultsSummary-class Man page
AppSessionAuth-class Man page
AppSessions Man page
AppSessions,AppAuth-method Man page
AppSessions,AppResults-method Man page
AppSessions-class Man page
BaseSpaceR Man page
BaseSpaceR-package Man page
Collection-class Man page
CollectionFromJList Source code
DateCreated Man page
DateCreated,Collection-method Man page
DateCreated,Item-method Man page
DateCreated,Response-method Man page
DisplayedCount Man page
DisplayedCount,Collection-method Man page
DisplayedCount,Item-method Man page
DisplayedCount,Response-method Man page
Files Man page
Files,AppAuth-method Man page
Files,FilesSummary-method Man page
Files,missing-method Man page
Files-class Man page
FilesByResource Source code
FilesSummary-class Man page
GET,ServiceURI-method Man page
Genomes Man page
Genomes,AppAuth-method Man page
Genomes,GenomesSummary-method Man page
Genomes,missing-method Man page
Genomes-class Man page
GenomesSummary-class Man page
Href Man page
Href,Collection-method Man page
Href,Item-method Man page
Href,Response-method Man page
HrefBaseSpaceUI Man page
HrefBaseSpaceUI,Collection-method Man page
HrefBaseSpaceUI,Item-method Man page
HrefBaseSpaceUI,Response-method Man page
Id Man page
Id,Collection-method Man page
Id,Item-method Man page
Id,Response-method Man page
Item-class Man page
ItemFromJList Source code
Items Man page
Items,Collection-method Man page
Items,Item-method Man page
Items,Response-method Man page
Limit Man page
Limit,Collection-method Man page
Limit,Item-method Man page
Limit,Response-method Man page
Name Man page
Name,Collection-method Man page
Name,Item-method Man page
Name,Response-method Man page
Offset Man page
Offset,Collection-method Man page
Offset,Item-method Man page
Offset,Response-method Man page
POST,ServiceURI-method Man page
POSTForm,ServiceURI-method Man page
Projects Man page
Projects,AppAuth-method Man page
Projects,ProjectsSummary-method Man page
Projects,missing-method Man page
Projects-class Man page
ProjectsSummary-class Man page
Response Man page
Response-class Man page
ResponseStatus Man page Source code
ResponseStatus-class Man page
Runs Man page
Runs,AppAuth-method Man page
Runs,RunsSummary-method Man page
Runs,missing-method Man page
Runs-class Man page
RunsSummary-class Man page
Samples Man page
Samples,AppAuth-method Man page
Samples,SamplesSummary-method Man page
Samples,missing-method Man page
Samples-class Man page
SamplesSummary-class Man page
ServiceURI Man page Source code
ServiceURI-class Man page
SortBy Man page
SortBy,Collection-method Man page
SortBy,Item-method Man page
SortBy,Response-method Man page
SortDir Man page
SortDir,Collection-method Man page
SortDir,Item-method Man page
SortDir,Response-method Man page
Status Man page
Status,Collection-method Man page
Status,Item-method Man page
Status,Response-method Man page
TotalCount Man page
TotalCount,Collection-method Man page
TotalCount,Item-method Man page
TotalCount,Response-method Man page
UserOwnedBy Man page
UserOwnedBy,Collection-method Man page
UserOwnedBy,Item-method Man page
UserOwnedBy,Response-method Man page
Users Man page Man page
Users,AppAuth-method Man page
Users,Response-method Man page
Users,missing-method Man page
Users-class Man page
[,Collection-method Man page
[,Response-method Man page
[[,Collection,numeric-method Man page
[[,Response,ANY-method Man page
aAuth Man page
appResultCollection Man page Source code
appResultCollection-class Man page
appResultItem Man page Source code
appResultItem-class Man page
appSessionItem Man page Source code
appSessionItem-class Man page
as.character,staticHref-method Man page
as.list,Collection-method Man page
as.list,Item-method Man page
as.list,Response-method Man page
asBamFile Source code
as_id Source code
auth Man page
auth,Href-method Man page
auth,Response-method Man page
authNativeClient Man page Source code
authWebClient Man page Source code
countAppResults Man page
countAppResults,AppAuth-method Man page
countAppResults,Projects-method Man page
countAppResults,ProjectsSummary-method Man page
countAppResults,Response-method Man page
countAppSessions Man page
countAppSessions,AppAuth-method Man page
countAppSessions,Response-method Man page
countFiles Man page
countFiles,AppAuth-method Man page
countFiles,AppResults-method Man page
countFiles,AppResultsSummary-method Man page
countFiles,Response-method Man page
countFiles,Runs-method Man page
countFiles,RunsSummary-method Man page
countFiles,Samples-method Man page
countFiles,SamplesSummary-method Man page
countFilesByResource Source code
countGenomes Man page
countProjects Man page
countProjects,AppAuth-method Man page
countProjects,Response-method Man page
countRuns Man page
countRuns,AppAuth-method Man page
countRuns,Response-method Man page
countSamples Man page
countSamples,AppAuth-method Man page
countSamples,Projects-method Man page
countSamples,ProjectsSummary-method Man page
countSamples,Response-method Man page
createAppResults Man page
createAppResults,AppAuth-method Man page
createAppResults,Projects-method Man page
createProject Man page
createProject,AppAuth-method Man page
extractStatus Source code
fileCollection Man page Source code
fileCollection-class Man page
fileItem Man page Source code
fileItem-class Man page
forceIntegers Source code
genomeCollection Man page Source code
genomeCollection-class Man page
genomeItem Man page Source code
genomeItem-class Man page
getBAMs Man page
getBAMs,AppResults-method Man page
getCoverage Man page
getCoverage,AppAuth-method Man page
getCoverageStats Man page
getCoverageStats,AppAuth-method Man page
getFiles Man page
getFiles,AppAuth-method Man page
getIndexedBam Man page Source code
getVariantSet Man page
getVariantSet,AppAuth-method Man page
getVariants Man page
getVariants,AppAuth-method Man page
hasAccess Man page
hasAccess,AppAuth-method Man page
id_from_href Source code
initializeAuth Man page
initializeAuth,AppAuth-method Man page
length,Collection-method Man page
length,Item-method Man page
length,Response-method Man page
listAppResults Man page
listAppResults,AppAuth-method Man page
listAppResults,Projects-method Man page
listAppSessions Man page
listAppSessions,AppAuth-method Man page
listFiles Man page
listFiles,AppAuth-method Man page
listFiles,AppResults-method Man page
listFiles,AppResultsSummary-method Man page
listFiles,Runs-method Man page
listFiles,RunsSummary-method Man page
listFiles,Samples-method Man page
listFiles,SamplesSummary-method Man page
listGenomes Man page Man page
listGenomes,AppAuth-method Man page Man page
listGenomes,Response-method Man page
listProjects Man page
listProjects,AppAuth-method Man page
listProjects,Response-method Man page
listRuns Man page
listRuns,AppAuth-method Man page
listRuns,Response-method Man page
listSamples Man page
listSamples,AppAuth-method Man page
listSamples,Projects-method Man page
list_len Source code
make_resource Source code
named_list Source code
onAttach Source code
performOAuth Man page Source code
printFail Source code
projectCollection Man page Source code
projectCollection-class Man page
projectItem Man page Source code
projectItem-class Man page
putFiles Man page
putFiles,AppAuth-method Man page
query Source code
queryResource Source code
requestAccessToken Man page
requestAccessToken,AppAuth-method Man page
runCollection Man page Source code
runCollection-class Man page
runItem Man page Source code
runItem-class Man page
sampleCollection Man page Source code
sampleCollection-class Man page
sampleItem Man page Source code
sampleItem-class Man page
selectFromItemList Source code
show,Collection-method Man page
show,Href-method Man page
show,Item-method Man page
show,Response-method Man page
show,ResponseStatus-method Man page
show,ServiceURI-method Man page
show,staticHref-method Man page
showItem Source code
staticHref Source code
tokenizeURI Source code
transpose_items Source code
transpose_list Source code
updateAppSessions Man page
updateAppSessions,AppAuth-method Man page
uri Man page
uri,ServiceURI-method Man page
userItem Man page Source code
userItem-class Man page
BaseSpaceR documentation built on May 2, 2018, 3:11 a.m.