Files-class: 'Files' and 'FilesSummary' objects

In BaseSpaceR: R SDK for BaseSpace RESTful API

Description

Classes and methods to handle the Files resource.

Details

The Files resource provides access to files stored in BaseSpace. A file should be seen as a data stream and associated attributes (date created, size, type, etc.).

Files are associated with specific Runs, Samples, or AppResults and the Files resource provides the interface for manipulating these files.

Author(s)

Adrian Alexa

References

https://developer.basespace.illumina.com/docs/content/documentation/rest-api/api-reference

See Also

AppAuth, Runs, Samples and AppResults.

Examples

data(aAuth)


## get one AppResult
reseq <- AppResults(listAppResults(aAuth, projectId = 21383369, Limit = 1))

f <- listFiles(reseq)
TotalCount(f)
Name(f)


identical(f, listFiles(aAuth, appResultId = Id(reseq)))

## list only the BAM files
f <- listFiles(aAuth, appResultId = Id(reseq), Extensions = ".bam")
Name(f)

BaseSpaceR documentation built on Nov. 8, 2020, 5:12 p.m.