FunciSNP: Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs

FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.

AuthorSimon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>
Date of publicationNone
MaintainerSimon G. Coetzee <simon@simoncoetzee.com>
LicenseGPL-3
Version1.16.0
http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/

View on Bioconductor

Files in this package

FunciSNP/DESCRIPTION
FunciSNP/NAMESPACE
FunciSNP/R
FunciSNP/R/classes.R FunciSNP/R/funcisnp.R
FunciSNP/build
FunciSNP/build/vignette.rds
FunciSNP/data
FunciSNP/data/datalist
FunciSNP/data/glioma.rda
FunciSNP/inst
FunciSNP/inst/CITATION
FunciSNP/inst/NEWS
FunciSNP/inst/doc
FunciSNP/inst/doc/FunciSNP_vignette.R
FunciSNP/inst/doc/FunciSNP_vignette.Rnw
FunciSNP/inst/doc/FunciSNP_vignette.pdf
FunciSNP/inst/extdata
FunciSNP/inst/extdata/TFBS_Nrsf_U87.bed
FunciSNP/inst/extdata/TFBS_Pol2_U87.bed
FunciSNP/inst/extdata/glioma.snp
FunciSNP/man
FunciSNP/man/CorrelatedSNPs-class.Rd FunciSNP/man/FunciSNP-package.Rd FunciSNP/man/FunciSNPAnnotateSummary.Rd FunciSNP/man/FunciSNPbed.Rd FunciSNP/man/FunciSNPidsFromSummary.Rd FunciSNP/man/FunciSNPplot.Rd FunciSNP/man/FunciSNPsummaryOverlaps.Rd FunciSNP/man/FunciSNPtable.Rd FunciSNP/man/TSList-class.Rd FunciSNP/man/TagSNP-class.Rd FunciSNP/man/getFSNPs.Rd
FunciSNP/vignettes
FunciSNP/vignettes/FunciSNP_vignette.Rnw
FunciSNP/vignettes/UCSC_genomeviewer_glioma.pdf

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