FunciSNPsummaryOverlaps: Summarizes FunciSNP results by overlaps

Description Usage Arguments Note Author(s) References See Also Examples

View source: R/funcisnp.R

Description

This will summarize the total number of YAFSNPs identified by the number of biofeatures per tagSNP

Usage

1

Arguments

dat

FunciSNP data object

rsq

Rsquare value used to filter the summary report

Note

NA

Author(s)

Simon G. Coetzee (maintainer: scoetzee@gmail.com); Houtan Noushmehr, PhD (houtan@usp.br)

References

SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).

See Also

getFSNPs, FunciSNPplot, FunciSNPAnnotateSummary, FunciSNPtable, FunciSNPbed

Examples

1
2
3
data(glioma);
glioma.anno <- FunciSNPAnnotateSummary(glioma);
FunciSNPsummaryOverlaps(glioma.anno, rsq = 0.2);

FunciSNP documentation built on Nov. 8, 2020, 4:56 p.m.