This will annotate all identified YAFSNP for it's distance to the nearest known TSS, whether it overlapps a known exon, intron, 5'UTR, 3'UTR, promoter, lincRNA or in gene desert (intergentic) regions.
a FunciSNP object:
All known genomic features (exon, intron, 5'UTR, 3'UTR, promoter, lincRNA or in gene desert (intergentic)) are used to annotate the newly identified YAFSNP. Information described in this data.frame is used for all summary plots, table, and bed file generations.
data.frame with rows for each correlated SNP.
Simon G. Coetzee (maintainer: email@example.com); Houtan Noushmehr, PhD (firstname.lastname@example.org)
SG. Coetzee, SK. Rhie, BP. Berman, GA. Coetzee and H. Noushmehr, FunciSNP: An R/Bioconductor Tool Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs., Nucleic Acids Research, In press, 2012 (doi:10.1093/nar/gks542).
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