A simple framework to facilitate the comparison of pipelines involving various steps and parameters. The `pipelineDefinition` class represents pipelines as, minimally, a set of functions consecutively executed on the output of the previous one, and optionally accompanied by step-wise evaluation and aggregation functions. Given such an object, a set of alternative parameters/methods, and benchmark datasets, the `runPipeline` function then proceeds through all combinations arguments, avoiding recomputing the same step twice and compiling evaluations on the fly to avoid storing potentially large intermediate data.
|Author||Pierre-Luc Germain [cre, aut] (<https://orcid.org/0000-0003-3418-4218>), Anthony Sonrel [aut] (<https://orcid.org/0000-0002-2414-715X>), Mark D. Robinson [aut, fnd] (<https://orcid.org/0000-0002-3048-5518>)|
|Bioconductor views||Clustering DataRepresentation GeneExpression Transcriptomics|
|Maintainer||Pierre-Luc Germain <firstname.lastname@example.org>|
|Package repository||View on Bioconductor|
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