Description Usage Arguments Value Examples
scrna_evalPlot_filtering
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res |
Aggregated pipeline results (i.e. the output of 'runPipeline' or 'aggregateResults') |
steps |
Steps to include (default 'doublet' and 'filtering'); other steps will be averaged. |
clustMetric |
Clustering accuracy metric to use (default 'mean_F1“) |
filterExpr |
An optional filtering expression based on the columns of the clustering evaluation (e.g. 'filterExpr=param1=="value1"' or 'filterExpr=n_clus==true.nbClusts'). |
atNearestK |
Logical; whether to restrict analyses to those giving the smallest deviation from the real number of clusters (default FALSE). |
returnTable |
Logical; whether to return the data rather than plot. |
point.size |
Size of the points |
... |
passed to 'geom_point' |
A ggplot, or a data.frame if 'returnTable=TRUE'
1 2 | data("exampleResults", package="pipeComp")
scrna_evalPlot_filtering(exampleResults)
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