Description Usage Arguments Value Examples
View source: R/dea_evaluationFunctions.R
Evaluates a differential expression analysis (DEA).
1 | evaluateDEA(dea, truth = NULL, th = c(0.01, 0.05, 0.1))
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dea |
Expects a data.frame with logFC and FDR, as produced by 'edgeR::topTags', 'limma::topTable' or 'DESeq2::results'. |
truth |
A data.frame containing the columns 'expected.beta' (real logFC) and 'isDE' (logical indicating whether there is a difference or not; accepts NA values) |
th |
The significance thresholds for which to compute the metrics. |
A list with two slots: 'logFC' (vector of metrics on logFC) and 'significance' table of significance-related statistics.
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