HCAMatrixBrowser
Extract and manage matrix data from the Human Cell Atlas project

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HCAMatrixBrowser: Extract and manage matrix data from the Human Cell Atlas project

HCAMatrixBrowser: Extract and manage matrix data from the Human Cell Atlas project

The HCAMatrixBrowser queries the HCA matrix endpoint to download expression data and returns a standard Bioconductor object. It uses the LoomExperiment package to serve matrix data that is downloaded as HDF5 loom format.

Getting started

README.md Generating HCAMatrix queries with the API HCAMatrixBrowser Quick Start

Browse package contents

Vignettes Man pages API and functions Files

Package details
AuthorMarcel Ramos [aut, cre] (<https://orcid.org/0000-0002-3242-0582>), Martin Morgan [aut] (0000-002-5874-8148)
Bioconductor views DataRepresentation Infrastructure Software
MaintainerMarcel Ramos <marcel.ramos@roswellpark.org>
LicenseArtistic-2.0
Version1.0.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCAMatrixBrowser")

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HCAMatrixBrowser documentation built on Nov. 8, 2020, 5:15 p.m.

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