hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists

Recently a very large collection of single-cell RNA-seq (scRNA-seq) datasets has been generated and publicly released. For the collection to be useful, the information must be organized in a way that supports queries that are relevant to researchers. `scfind` builds an index from scRNA-seq datasets which organizes the information in a suitable and compact manner so that the datasets can be very efficiently searched for either cells or cell types in which a given list of genes is expressed.

Getting started

Package details

AuthorJimmy Lee, Nikolaos Patikas
Bioconductor views DataRepresentation GeneExpression RNASeq Sequencing SingleCell Software Transcription Transcriptomics
MaintainerJimmy Lee <thjimmylee@gmail.com>, Nikolaos Patikas <nik.patik@gmail.com>
LicenseGPL-3 + file LICENSE
Version3.7.0
URL https://github.com/hemberg-lab/scfind
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("hemberg-lab/scfind")
hemberg-lab/scfind documentation built on April 1, 2021, 4:42 a.m.