hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists
Version 0.99.6

Recently a very large collection of single-cell RNA-seq (scRNA-seq) datasets has been generated and publicly released. For the collection to be useful, the information must be organized in a way that supports queries that are relevant to researchers. `scfind` builds an index from scRNA-seq datasets which organizes the information in a suitable and compact manner so that the datasets can be very efficiently searched for either cells or cell types in which a given list of genes is expressed.

Getting started

Package details

AuthorVladimir Kiselev
Bioconductor views DataRepresentation GeneExpression RNASeq Sequencing SingleCell Software Transcription Transcriptomics
MaintainerVladimir Kiselev <[email protected]>
LicenseGPL-3
Version0.99.6
URL https://github.com/hemberg-lab/scfind
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("hemberg-lab/scfind")
hemberg-lab/scfind documentation built on Nov. 9, 2017, 3:19 p.m.