findHouseKeepingGenes: Find the set of genes that are ubiquitously expressed in a...

In hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists

Find the set of genes that are ubiquitously expressed in a query of cell types

Description

Find the set of genes that are ubiquitously expressed in a query of cell types

Find the set of genes that are ubiquitously expressed in a query of cell types

Usage

findHouseKeepingGenes(object, cell.types, min.recall = 0.5,
  max.genes = 1000)

house.keeping.genes(object, cell.types, min.recall = 0.5,
  max.genes = 1000)

## S4 method for signature 'SCFind,character'
findHouseKeepingGenes(object, cell.types,
  min.recall = 0.5, max.genes = 1000)

Arguments

object	the SCFind object
cell.types	a list of cell types for the list to evaluated
min.recall	threshold of minimun recall value
max.genes	threshold of number of genes to be considered for each cell type

Value

the list of gene that ubiquitously expressed in a query of cell types

hemberg-lab/scfind documentation built on March 27, 2022, 8:56 p.m.