findCellTypeSpecificities: Find out how many cell-types each gene is found

In hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists

Find out how many cell-types each gene is found

Description

Find out how many cell-types each gene is found

Find out how many cell-types each gene is found

Usage

findCellTypeSpecificities(object, gene.list, datasets, min.cells = 10,
  min.fraction = 0.25)

cell.type.specificity(object, gene.list, datasets, min.cells = 10,
  min.fraction = 0.25)

## S4 method for signature 'SCFind'
findCellTypeSpecificities(object, gene.list, datasets,
  min.cells = 10, min.fraction = 0.25)

Arguments

object	the SCFind object
gene.list	genes to be searched in the gene.index
datasets	the datasets that will be considered
min.cells	threshold of cell hit of a cell type
min.fraction	portion of total cell as threshold

Value

the list of number of cell type for each gene

hemberg-lab/scfind documentation built on March 27, 2022, 8:56 p.m.