findGeneSignatures: Find the signature genes for a cell-type

In hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists

Find the signature genes for a cell-type

Description

Find the signature genes for a cell-type

Find the signature genes for a cell-type

Usage

findGeneSignatures(object, cell.types, max.genes = 1000,
  min.cells = 10, max.pval = 0)

gene.signatures(object, cell.types, max.genes = 1000, min.cells = 10,
  max.pval = 0)

## S4 method for signature 'SCFind'
findGeneSignatures(object, cell.types,
  max.genes = 1000, min.cells = 10, max.pval = 0)

Arguments

object	the SCFind object
cell.types	a list of cell types for the list to evaluated
max.genes	threshold of number of genes to be considered for each cell type
min.cells	threshold of cell hit of a tissue
max.pval	threshold of p-value

Value

the list of gene signatures in a query of cell types

hemberg-lab/scfind documentation built on March 27, 2022, 8:56 p.m.