markerGenes: Performs query optimization and return the best candidate...

In hemberg-lab/scfind: A search tool for single cell RNA-seq data by gene lists

Performs query optimization and return the best candidate gene sets

Description

This function can be used with quite long gene lists that otherwise would have no cell hits in the database

Usage

markerGenes(object, gene.list, datasets, exhaustive = FALSE, support.cutoff = -1)

find.marker.genes(object, gene.list, datasets, exhaustive, support.cutoff)

## S4 method for signature 'SCFind,character'
markerGenes(object, gene.list, datasets, exhaustive = FALSE, support.cutoff = -1)

Arguments

object	SCFind object
gene.list	A list of nGenes existing in the database
datasets	the datasets of the objects to be considered
exhaustive	use bootstrap method instead of the default frequent pattern growth
support.cutoff	define result cutoff

Value

hierarchical list of queries and their respective scores

hemberg-lab/scfind documentation built on March 27, 2022, 8:56 p.m.