API for hemberg-lab/scfind
A search tool for single cell RNA-seq data by gene lists
| Global functions | |
|---|---|
| ExampleIndex | Man page |
| SCFind-class | Man page |
| buildCellTypeIndex | Man page |
| buildCellTypeIndex,SingleCellExperiment-method | Man page |
| buildCellTypeIndex.SCESet | Man page Source code |
| buildIndex | Man page |
| caseCorrect | Source code |
| cell.type.marker | Man page Source code |
| cell.type.specificity | Man page Source code |
| cell.types.phyper.test | Man page Source code |
| cellTypeMarkers | Man page |
| cellTypeMarkers,SCFind,character-method | Man page |
| cellTypeNames | Man page |
| cellTypeNames,SCFind-method | Man page |
| contigency.table | Source code |
| evaluate.cell.type.markers | Man page Source code |
| evaluateMarkers | Man page |
| evaluateMarkers,SCFind,character-method | Man page |
| find.marker.genes | Man page Source code |
| find.signature | Source code |
| findCellTypeSpecificities | Man page |
| findCellTypeSpecificities,SCFind-method | Man page |
| findCellTypes | Man page |
| findCellTypes,SCFind,character-method | Man page |
| findCellTypes.geneList | Man page Source code |
| findGeneSignatures | Man page |
| findGeneSignatures,SCFind-method | Man page |
| findHouseKeepingGenes | Man page |
| findHouseKeepingGenes,SCFind,character-method | Man page |
| findSimilarGenes | Man page |
| findSimilarGenes,SCFind,character-method | Man page |
| findTissueSpecificities | Man page |
| findTissueSpecificities,SCFind-method | Man page |
| gene.signatures | Man page Source code |
| get.cell.types.names | Man page Source code |
| house.keeping.genes | Man page Source code |
| hyperQueryCellTypes | Man page |
| hyperQueryCellTypes,SCFind,character-method | Man page |
| load.serialized.object | Man page Source code |
| loadObject | Man page |
| loadObject,ANY-method | Man page |
| markerGenes | Man page |
| markerGenes,SCFind,character-method | Man page |
| merge.dataset.from.object | Man page Source code |
| merge.dataset.from.sce | Man page Source code |
| mergeDataset | Man page |
| mergeDataset,SCFind,SCFind-method | Man page |
| mergeIndices | Man page Source code |
| mergeObjects | Man page |
| mergeSCE | Man page |
| mergeSCE,SCFind,SingleCellExperiment,character-method | Man page |
| pair.id | Source code |
| phyper.test | Source code |
| plotCellNumberHisto | Source code |
| query.result.as.dataframe | Source code |
| save.serialized.object | Man page Source code |
| saveObject | Man page |
| saveObject,ANY-method | Man page |
| scfind | Man page |
| scfind-package | Man page |
| scfind.get.genes.in.db | Man page Source code Source code |
| scfind.interactive | Man page Source code |
| scfindGenes | Man page |
| scfindGenes,SCFind-method | Man page |
| scfindShiny | Man page |
| scfindShiny,SCFind-method | Man page |
| scfindShinyServer | Man page |
| scfindShinyServer,SCFind-method | Man page |
| select.datasets | Source code |
| server.scfind | Man page Source code |
| similar.genes | Man page Source code |
| tissue.specificity | Man page Source code |
| tm10x | Man page |
| tmfacs | Man page |
| ui.scfind | Man page Source code |
