drighelli/SpatialExperiment: S4 Class for Spatially Resolved -omics Data

Defines an S4 class for storing data from spatial -omics experiments. The class extends SingleCellExperiment to support storage and retrieval of additional information from spot-based and molecule-based platforms, including spatial coordinates, images, and image metadata. A specialized constructor function is included for data from the 10x Genomics Visium platform.

Getting started

Package details

Bioconductor views DataImport DataRepresentation GeneExpression ImmunoOncology Infrastructure SingleCell Spatial Transcriptomics
URL https://github.com/drighelli/SpatialExperiment
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
drighelli/SpatialExperiment documentation built on June 30, 2024, 9:12 p.m.