hloefflerwirth/oposSOM: Comprehensive analysis of transcriptome data

This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.

Getting started

Package details

AuthorHenry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>, Hoang Thanh Le <le@izbi.uni-leipzig.de> and Martin Kalcher <mkalcher@porkbox.net>
Bioconductor views DataRepresentation DifferentialExpression GeneExpression GeneSetEnrichment Visualization
MaintainerHenry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>
LicenseGPL (>=2)
URL http://som.izbi.uni-leipzig.de
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
hloefflerwirth/oposSOM documentation built on Oct. 25, 2023, 12:33 a.m.