Files in hloefflerwirth/oposSOM

Comprehensive analysis of transcriptome data

DESCRIPTION

NAMESPACE

NEWS

R/RcppExports.R R/affymetrix_quality_check.r R/biomart_available.r R/cancer_hallmarks.r R/check_input_parameters.r R/chromosome_expression_reports.r R/color_scheme.r R/detect_ensembl_dataset.r R/detect_spots_functions.r R/detect_spots_modules.r R/diffExpression_statistics.r R/difference_analyses.r R/entropy_profiles.r R/gene_lists.r R/geneset_analysis.r R/geneset_overviews.r R/geneset_profiles_and_maps.r R/geneset_statistic_modules.r R/geneset_statistic_samples.r R/get_running_average.r R/get_statistic.r R/group_analyses.r R/group_assignment.r R/group_specific_genesets.r R/heatmaps.r R/html_differences_summary.r R/html_geneset_analysis.r R/html_group_summary.r R/html_module_summary.r R/html_psf_analysis.r R/html_sample_summary.r R/html_summary.r R/module_correlation_map.r R/modules_CSV.r R/modules_chromosomes.r R/modules_profiles.r R/modules_relations.r R/modules_reports.r R/opossom.r R/pat_assignment.r R/prepare_annotation.r R/primary_analysis.r R/psf.analysis.r R/psf.overview.heatmaps.r R/psf.report.sheets.r R/quality_check.r R/quantile_normalization.r R/radarchart.r R/sample_expression_portraits.r R/sample_similarity_analysis_ED.r R/sample_similarity_analysis_ICA.r R/sample_similarity_analysis_SOM.r R/sample_similarity_analysis_cor.r R/som.linear.init.r R/som.training.r R/spot_borders.r R/summary_sheets_groups.r R/summary_sheets_modules.r R/summary_sheets_pats.r R/summary_sheets_samples.r R/supporting_maps.r R/topology_profiles.r R/util.r R/workspace_check.r README.md

data/hsa03320.RData

data/hsa04010.RData

data/hsa04012.RData

data/hsa04014.RData

data/hsa04015.RData

data/hsa04020.RData

data/hsa04022.RData

data/hsa04024.RData

data/hsa04062.RData

data/hsa04064.RData

data/hsa04066.RData

data/hsa04068.RData

data/hsa04070.RData

data/hsa04071.RData

data/hsa04072.RData

data/hsa04115.RData

data/hsa04150.RData

data/hsa04151.RData

data/hsa04152.RData

data/hsa04261.RData

data/hsa04310.RData

data/hsa04330.RData

data/hsa04340.RData

data/hsa04350.RData

data/hsa04370.RData

data/hsa04371.RData

data/hsa04390.RData

data/hsa04392.RData

data/hsa04550.RData

data/hsa04620.RData

data/hsa04621.RData

data/hsa04622.RData

data/hsa04625.RData

data/hsa04630.RData

data/hsa04657.RData

data/hsa04660.RData

data/hsa04662.RData

data/hsa04664.RData

data/hsa04668.RData

data/hsa04722.RData

data/hsa04723.RData

data/hsa04910.RData

data/hsa04912.RData

data/hsa04915.RData

data/hsa04917.RData

data/hsa04919.RData

data/hsa04920.RData

data/hsa04921.RData

data/hsa04922.RData

data/hsa04926.RData

data/hsa04933.RData

data/hsa05120.RData

data/kegg.collection.RData

data/opossom.genesets.RData

data/opossom.tissues.RData

inst/CITATION

man/oposSOM-package.Rd man/opossom.genesets.Rd man/opossom.new.Rd man/opossom.run.Rd man/opossom.tissues.Rd

src/DeltaMatrix.cpp

src/DistanceCalculator.cpp

src/Makevars

src/Makevars.win

src/NeighborhoodMatrix.cpp

src/RcppExports.cpp

vignettes/HTML.pdf vignettes/SizeRecommendation.pdf vignettes/Summary.pdf

vignettes/Vignette.Rnw

vignettes/opossom.bib

hloefflerwirth/oposSOM documentation built on April 15, 2024, 6:01 a.m.