opossom.genesets: Additional literature genesets
In hloefflerwirth/oposSOM: Comprehensive analysis of transcriptome data
opossom.genesets R Documentation
Additional literature genesets
Description
Genesets collected from publications and independent analyses.
Usage
data(opossom.genesets)
Format
The data set is stored in RData (binary) format. Each element of the list represents one distinct gene set and contains the Ensembl-IDs of the member genes.
Details
The oposSOM package allows for analysing the biological background of the samples using predefined sets of genes of known biological context. A large and diverse collection of such gene sets is automatically derived from the Gene Ontology (GO) annotation database using biomaRt interface. opossom.genesets contains more than 4,500 additional gene sets collected from Biocarta, KEGG and Reactome databases, from literature on chemical and genetic perturbations, from literature on cancer types and subtypes, and from previous analyses using the oposSOM pipeline.
hloefflerwirth/oposSOM documentation built on April 15, 2024, 6:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| opossom.genesets | R Documentation |
Additional literature genesets
Description
Genesets collected from publications and independent analyses.
Usage
data(opossom.genesets)
Format
The data set is stored in RData (binary) format. Each element of the list represents one distinct gene set and contains the Ensembl-IDs of the member genes.
Details
The oposSOM package allows for analysing the biological background of the samples using predefined sets of genes of known biological context. A large and diverse collection of such gene sets is automatically derived from the Gene Ontology (GO) annotation database using biomaRt interface. opossom.genesets contains more than 4,500 additional gene sets collected from Biocarta, KEGG and Reactome databases, from literature on chemical and genetic perturbations, from literature on cancer types and subtypes, and from previous analyses using the oposSOM pipeline.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.