zellkonverter: Conversion Between scRNA-seq Objects

Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes functions to read and write H5AD files used for saving AnnData objects to disk.

Package details

AuthorLuke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>), Aaron Lun [aut] (<https://orcid.org/0000-0002-3564-4813>)
Bioconductor views DataImport DataRepresentation SingleCell
MaintainerLuke Zappia <luke@lazappi.id.au>
LicenseMIT + file LICENSE
URL https://github.com/theislab/zellkonverter
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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zellkonverter documentation built on March 10, 2021, 2 a.m.