InteractionSet: Base Classes for Storing Genomic Interaction Data

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Getting started

Package details

AuthorAaron Lun [aut, cre], Malcolm Perry [aut], Elizabeth Ing-Simmons [aut]
Bioconductor views DataRepresentation HiC Infrastructure Software
MaintainerAaron Lun <[email protected]>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the InteractionSet package in your browser

Any scripts or data that you put into this service are public.

InteractionSet documentation built on Nov. 1, 2018, 2:03 a.m.