InteractionSet: Base Classes for Storing Genomic Interaction Data

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

AuthorAaron Lun <alun@wehi.edu.au>, Malcolm Perry <mgperry32@gmail.com>, Liz Ing-Simmons <liz.ing-simmons12@csc.mrc.ac.uk>
Date of publicationNone
MaintainerAaron Lun <alun@wehi.edu.au>
LicenseGPL-3
Version1.2.0

View on Bioconductor

Files in this package

InteractionSet/DESCRIPTION
InteractionSet/NAMESPACE
InteractionSet/R
InteractionSet/R/ContactMatrix-class.R InteractionSet/R/GInteractions-class.R InteractionSet/R/GRanges-methods.R InteractionSet/R/InteractionSet-class.R InteractionSet/R/boundingBox.R InteractionSet/R/conversion.R InteractionSet/R/distances.R InteractionSet/R/getset.R InteractionSet/R/linearize.R InteractionSet/R/linkOverlaps.R InteractionSet/R/matching.R InteractionSet/R/overlaps.R InteractionSet/R/pairs.R InteractionSet/R/swapAnchors.R
InteractionSet/build
InteractionSet/build/vignette.rds
InteractionSet/inst
InteractionSet/inst/CITATION
InteractionSet/inst/NEWS.Rd
InteractionSet/inst/doc
InteractionSet/inst/doc/interactions.R
InteractionSet/inst/doc/interactions.Rmd
InteractionSet/inst/doc/interactions.html
InteractionSet/man
InteractionSet/man/ContactMatrix-accessors.Rd InteractionSet/man/ContactMatrix-class.Rd InteractionSet/man/ContactMatrix-distances.Rd InteractionSet/man/ContactMatrix-overlaps.Rd InteractionSet/man/ContactMatrix-sorting.Rd InteractionSet/man/ContactMatrix-subset.Rd InteractionSet/man/GInteractions-class.Rd InteractionSet/man/InteractionSet-class.Rd InteractionSet/man/boundingBox.Rd InteractionSet/man/conversion.Rd InteractionSet/man/distances.Rd InteractionSet/man/granges-methods.Rd InteractionSet/man/interaction-accessors.Rd InteractionSet/man/interaction-compare.Rd InteractionSet/man/interaction-subset.Rd InteractionSet/man/linearize.Rd InteractionSet/man/linkOverlaps.Rd InteractionSet/man/overlaps.Rd InteractionSet/man/pairs.Rd
InteractionSet/src
InteractionSet/src/box_bounds.cpp
InteractionSet/src/init.cpp
InteractionSet/src/iset.h
InteractionSet/src/overlaps.cpp
InteractionSet/tests
InteractionSet/tests/testthat
InteractionSet/tests/testthat.R
InteractionSet/tests/testthat/test-CM.R
InteractionSet/tests/testthat/test-GI.R
InteractionSet/tests/testthat/test-IS.R
InteractionSet/tests/testthat/test-box.R
InteractionSet/tests/testthat/test-compare.R
InteractionSet/tests/testthat/test-convert.R
InteractionSet/tests/testthat/test-dist.R
InteractionSet/tests/testthat/test-grmeth.R
InteractionSet/tests/testthat/test-linear.R
InteractionSet/tests/testthat/test-link.R
InteractionSet/tests/testthat/test-olap.R
InteractionSet/vignettes
InteractionSet/vignettes/interactions.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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