Man pages for InteractionSet
Base Classes for Storing Genomic Interaction Data

boundingBoxGet the bounding box
ContactMatrix-accessorsContactMatrix accessors
ContactMatrix-classContactMatrix class and constructors
ContactMatrix-distancesCompute linear distances from ContactMatrix objects
ContactMatrix-overlapsFind overlaps between GRanges and a ContactMatrix
ContactMatrix-sortingContactMatrix sorting and ordering
ContactMatrix-subsetContactMatrix subsetting and combining
conversionConvert between classes
distancesGet the linear distance for each interaction
GInteractions-classGInteractions class and constructors
granges-methodsEquivalents of GRanges methods
interaction-accessorsInteraction accessors
interaction-bindInteraction combining
interaction-compareInteraction comparisons
InteractionSet-classInteractionSet class and constructors
interaction-subsetInteraction subsetting and combining
linearizeLinearize 2D interactions into 1D ranges
linkOverlapsLink overlapping regions
overlapsFind overlaps between interactions in one or two dimensions
pairsExtract paired ranges
InteractionSet documentation built on May 2, 2018, 4:22 a.m.