Files in InteractionSet

Base Classes for Storing Genomic Interaction Data

NAMESPACE

DESCRIPTION

R/getset.R R/AllGenerics.R R/boundingBox.R R/AllClasses.R R/conversion.R R/ContactMatrix-methods.R R/linkOverlaps.R R/InteractionSet-methods.R R/overlaps.R R/pairs.R R/swapAnchors.R R/GInteractions-methods.R R/linearize.R R/matching.R R/GRanges-methods.R R/distances.R

src/overlap_utils.h

src/init.cpp

src/iset.h

src/box_bounds.cpp

src/link_overlaps.cpp

src/overlap_utils.cpp

src/detect_overlaps.cpp

inst/NEWS.Rd

inst/CITATION

inst/doc/interactions.html

inst/doc/interactions.R inst/doc/interactions.Rmd

build/vignette.rds

tests/testthat.R tests/testthat/test-olap.R tests/testthat/test-convert.R tests/testthat/test-CM.R tests/testthat/test-linear.R tests/testthat/test-dist.R tests/testthat/test-IS.R tests/testthat/test-link.R tests/testthat/test-GI.R tests/testthat/test-grmeth.R tests/testthat/test-compare.R tests/testthat/test-box.R vignettes/interactions.Rmd man/ContactMatrix-class.Rd man/linkOverlaps.Rd man/distances.Rd man/GInteractions-class.Rd man/interaction-accessors.Rd man/InteractionSet-class.Rd man/ContactMatrix-distances.Rd man/overlaps.Rd man/ContactMatrix-accessors.Rd man/ContactMatrix-subset.Rd man/interaction-bind.Rd man/interaction-compare.Rd man/pairs.Rd man/ContactMatrix-sorting.Rd man/granges-methods.Rd man/ContactMatrix-overlaps.Rd man/conversion.Rd man/interaction-subset.Rd man/linearize.Rd man/boundingBox.Rd

InteractionSet documentation built on April 17, 2021, 6 p.m.