Bioconductor/HCAMatrixBrowser: Extract and manage matrix data from the Human Cell Atlas project

The HCAMatrixBrowser queries the HCA matrix endpoint to download expression data and returns a standard Bioconductor object. It uses the LoomExperiment package to serve matrix data that is downloaded as HDF5 loom format.

Getting started

Package details

Bioconductor views DataRepresentation Infrastructure Software
Maintainer
LicenseArtistic-2.0
Version1.3.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Bioconductor/HCAMatrixBrowser")
Bioconductor/HCAMatrixBrowser documentation built on March 16, 2023, 6:16 a.m.