HCAMatrix: API Entry function for the Human Cell Atlas Matrix service

In Bioconductor/HCAMatrixBrowser: Extract and manage matrix data from the Human Cell Atlas project

API Entry function for the Human Cell Atlas Matrix service

Description

This function allows the use of the HCA Matrix API

Usage

HCAMatrix()

available_filters(api)

filter_detail(api, filter_name)

available_formats(api)

format_detail(api, format_name)

available_features(api)

feature_detail(api, feature_name)

Arguments

api	An HCAMatrix API object
filter_name	character(1) The name of the filter to get more detail on
format_name	character(1) The format for which to obtain more detail on
feature_name	character(1) The feature for which to obtain more detail on

Value

An object of class 'HCAMatrix'

Filters

* available_filter - Get a list of filters within the API to filter with * filter_detail - Obtain more detail on a particular filter name

Formats

* available_formats - Get a list of matrix format outputs * format_detail - Obtain more detail on a particular matrix file format

Features

* available_features - Get a list of feature outputs, either genes or transcripts * feature_detail - Obtain more information on a matrix feature type

Examples

hca <- HCAMatrix()

Bioconductor/HCAMatrixBrowser documentation built on March 16, 2023, 6:16 a.m.