import_mtxzip: Import Human Cell Atlas '.mtx.zip' archives

In Bioconductor/HCAMatrixBrowser: Extract and manage matrix data from the Human Cell Atlas project

Import Human Cell Atlas '.mtx.zip' archives

Description

Import Human Cell Atlas '.mtx.zip' archives

Usage

import_mtxzip(
  path,
  ...,
  exdir = tempfile(),
  overwrite = FALSE,
  verbose = FALSE
)

Arguments

path	character(1) the path to the remote ('http://' or 'https://') or local '.zip' archive or, when '.data' is present, the column name (default '"path"') in which the path is found.
...	additional arguments, not supported.
exdir	character(1) directory in which to extract .zip archive.
overwrite	logical(1) overwrite existing files in 'exdir'?
verbose	logical(1) report progress using 'message()'.

Value

'SingleCellExperiment()' representing the expression data. Rows represent features and columns cells; counts are represented in a sparse matrix.

Examples

## Not run: 
    import_mtxzip("path/to/mtx/archive.zip")

## End(Not run)

Bioconductor/HCAMatrixBrowser documentation built on March 16, 2023, 6:16 a.m.