drighelli/VisiumExperiment: S4 Class for Spatially Resolved Transcriptomics Data

Defines an S4 class for storing data from spatially resolved transcriptomics (ST) experiments. The class extends SingleCellExperiment to support storage and retrieval of additional information from spot-based and molecule-based ST platforms, including spatial coordinates, images, and image metadata. A specialized constructor function is included for data from the 10x Genomics Visium platform.

Getting started

Package details

Bioconductor views DataImport DataRepresentation GeneExpression ImmunoOncology Infrastructure SingleCell Spatial Transcriptomics
URL https://github.com/drighelli/SpatialExperiment
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
drighelli/VisiumExperiment documentation built on March 31, 2022, 11:08 p.m.