API for drighelli/VisiumExperiment
S4 Class for Spatial Experiments handling

Global functions
.colData_validity Source code
.flush_cache Source code
.get_from_cache Source code
.get_imgData Source code
.get_img_idx Source code
.imgData_validity Source code
.mirror Source code
.path_validity Source code
.read_xyz Source code
.remote_file_cache Source code
.rotate Source code
.sce_to_spe Source code
.spatialCoords_validity Source code
.spatialData_validity Source code
.spe_show Source code
.spe_validity Source code
.spi_show Source code
.url_validity Source code
GET_FUN Source code
LoadedSpatialImage-class Man page
RemoteSpatialImage-class Man page
SET_FUN Source code
SpatialExperiment Man page Source code
SpatialExperiment-assays Man page
SpatialExperiment-class Man page
SpatialExperiment-colData Man page
SpatialExperiment-combine Man page
SpatialExperiment-methods Man page
SpatialExperiment-misc Man page
SpatialExperiment-subset Man page
SpatialImage Man page Source code
SpatialImage-class Man page
SpatialImage-misc Man page
StoredSpatialImage-class Man page
[,SpatialExperiment,ANY,ANY,ANY-method Man page
addImg Man page
addImg,SpatialExperiment-method Man page
as.raster.SpatialImage Source code
cbind,SingleCellExperiment-method Man page
cbind,SpatialExperiment-method Man page
coerce,RemoteSpatialImage,StoredSpatialImage-method Man page
coerce,SpatialImage,LoadedSpatialImage-method Man page
colData Man page
colData<- Man page
colData<-,SpatialExperiment,DataFrame-method Man page
colData<-,SpatialExperiment,NULL-method Man page
dim,SpatialImage-method Man page
getImg Man page
getImg,SpatialExperiment-method Man page
imgData Man page
imgData,SpatialExperiment-method Man page
imgData-methods Man page
imgData<- Man page
imgData<-,SpatialExperiment,DataFrame-method Man page
imgData<-,SpatialExperiment,NULL-method Man page
imgRaster Man page
imgRaster,LoadedSpatialImage-method Man page
imgRaster,RemoteSpatialImage-method Man page
imgRaster,SpatialExperiment-method Man page
imgRaster,StoredSpatialImage-method Man page
imgRaster<- Man page
imgRaster<-,LoadedSpatialImage-method Man page
imgSource Man page
imgSource,LoadedSpatialImage-method Man page
imgSource,RemoteSpatialImage-method Man page
imgSource,SpatialExperiment-method Man page
imgSource,StoredSpatialImage-method Man page
imgSource<- Man page
imgSource<-,RemoteSpatialImage,character-method Man page
imgSource<-,StoredSpatialImage,character-method Man page
mirrorImg Man page
mirrorImg,LoadedSpatialImage-method Man page
mirrorImg,SpatialExperiment-method Man page
mirrorImg,SpatialImage-method Man page
molecules Man page
molecules,SpatialExperiment-method Man page
molecules<- Man page
molecules<-,SpatialExperiment-method Man page
read10xVisium Man page Source code
readImgData Man page Source code
rmvImg Man page
rmvImg,SpatialExperiment-method Man page
rotateImg Man page
rotateImg,LoadedSpatialImage-method Man page
rotateImg,SpatialExperiment-method Man page
rotateImg,SpatialImage-method Man page
scaleFactors Man page
scaleFactors,SpatialExperiment-method Man page
show,SpatialExperiment-method Man page
show,SpatialImage-method Man page
spatialCoords Man page
spatialCoords,SpatialExperiment-method Man page
spatialCoords<- Man page
spatialCoords<-,SpatialExperiment,NULL-method Man page
spatialCoords<-,SpatialExperiment,matrix-method Man page
spatialCoordsNames Man page
spatialCoordsNames,SpatialExperiment-method Man page
spatialCoordsNames<- Man page
spatialCoordsNames<-,SpatialExperiment,NULL-method Man page
spatialCoordsNames<-,SpatialExperiment,character-method Man page
spatialData Man page
spatialData,SpatialExperiment-method Man page
spatialData<- Man page
spatialData<-,SpatialExperiment,DFrame-method Man page
spatialData<-,SpatialExperiment,NULL-method Man page
spatialDataNames Man page
spatialDataNames,SpatialExperiment-method Man page
spatialDataNames<- Man page
spatialDataNames<-,SpatialExperiment,character-method Man page
drighelli/VisiumExperiment documentation built on Nov. 25, 2021, 9:23 a.m.