chromPlot: Global visualization tool of genomic data

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Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author
Ricardo A. Verdugo and Karen Y. Orostica
Date of publication
None
Maintainer
Karen Y. Orostica <korostica09@gmail.com>
License
GPL (>= 2)
Version
1.2.0

View on Bioconductor

Man pages

chromPlot
Global visualization tool of genomic data
chromPlot-package
Global visualization tool of genomic data
hg_cytoBandIdeo
cytoBandIdeo human
hg_gap
Human Gap
mm10_cytoBandIdeo
cytoBandIdeo
mm10_gap
Gaps

Files in this package

chromPlot/DESCRIPTION
chromPlot/NAMESPACE
chromPlot/NEWS
chromPlot/R
chromPlot/R/chromplot-Internal.R
chromPlot/R/chromplot.R
chromPlot/build
chromPlot/build/vignette.rds
chromPlot/data
chromPlot/data/hg_cytoBandIdeo.rda
chromPlot/data/hg_gap.rda
chromPlot/data/mm10_cytoBandIdeo.rda
chromPlot/data/mm10_gap.rda
chromPlot/inst
chromPlot/inst/doc
chromPlot/inst/doc/chromPlot.R
chromPlot/inst/doc/chromPlot.Rnw
chromPlot/inst/doc/chromPlot.pdf
chromPlot/inst/extdata
chromPlot/inst/extdata/CLG_AIMs_150_chr_hg19_v2_SNP_rs_rn.csv
chromPlot/inst/extdata/Fst_CEU-YRI-W200Chr19-21.bed
chromPlot/inst/extdata/GenesDEChr17-19.bed
chromPlot/inst/extdata/QTL.csv
chromPlot/inst/extdata/XPEHH_CEU-YRIChr19-21
chromPlot/inst/extdata/ancestry_humanChr19-21.txt
chromPlot/inst/extdata/arrayChr17-19.txt
chromPlot/inst/extdata/donor_regions.csv
chromPlot/inst/extdata/hg19_refGeneChr19-21.txt
chromPlot/inst/extdata/iHS_CEUChr19-21
chromPlot/inst/extdata/mm10_refGeneChr2-11-17-19.txt
chromPlot/inst/extdata/monocitosDEChr19-21.txt
chromPlot/inst/extdata/phenogram-ancestry-sample.txt
chromPlot/inst/extdata/sinteny_Hg-mm10Chr19-21.txt
chromPlot/man
chromPlot/man/chromPlot-package.Rd
chromPlot/man/chromPlot.Rd
chromPlot/man/hg_cytoBandIdeo.Rd
chromPlot/man/hg_gap.Rd
chromPlot/man/mm10_cytoBandIdeo.Rd
chromPlot/man/mm10_gap.Rd
chromPlot/vignettes
chromPlot/vignettes/chromPlot.Rnw