chromPlot: Global visualization tool of genomic data

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("chromPlot")
AuthorRicardo A. Verdugo and Karen Y. Orostica
Bioconductor views Annotation DataRepresentation FunctionalGenomics Genetics Sequencing Visualization
Date of publicationNone
MaintainerKaren Y. Orostica <korostica09@gmail.com>
LicenseGPL (>= 2)
Version1.4.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/chromplot-Internal.R R/chromplot.R
build
build/vignette.rds
data
data/hg_cytoBandIdeo.rda
data/hg_gap.rda
data/mm10_cytoBandIdeo.rda
data/mm10_gap.rda
inst
inst/doc
inst/doc/chromPlot.R
inst/doc/chromPlot.Rnw
inst/doc/chromPlot.pdf
inst/extdata
inst/extdata/CLG_AIMs_150_chr_hg19_v2_SNP_rs_rn.csv
inst/extdata/Fst_CEU-YRI-W200Chr19-21.bed
inst/extdata/GenesDEChr17-19.bed
inst/extdata/QTL.csv
inst/extdata/XPEHH_CEU-YRIChr19-21
inst/extdata/ancestry_humanChr19-21.txt
inst/extdata/arrayChr17-19.txt
inst/extdata/donor_regions.csv
inst/extdata/hg19_refGeneChr19-21.txt
inst/extdata/iHS_CEUChr19-21
inst/extdata/mm10_refGeneChr2-11-17-19.txt
inst/extdata/monocitosDEChr19-21.txt
inst/extdata/phenogram-ancestry-sample.txt
inst/extdata/sinteny_Hg-mm10Chr19-21.txt
man
man/chromPlot-package.Rd man/chromPlot.Rd man/hg_cytoBandIdeo.Rd man/hg_gap.Rd man/mm10_cytoBandIdeo.Rd man/mm10_gap.Rd
vignettes
vignettes/chromPlot.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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