mm10_cytoBandIdeo: cytoBandIdeo

In chromPlot: Global visualization tool of genomic data

Description

Describes the positions of cytogenetic bands with a chromosome of mouse.

Usage

data(mm10_cytoBandIdeo)

Format

A data frame with 448 observations on the following 5 variables.

Chrom

a character vector

Start

a numeric vector

End

a numeric vector

Name

a character vector

gieStain

a character vector

Details

This file describes the cytogenetics positions on chromosomes of mouse. specifically it has 5 columns Chrom, Start, End, Name y Group. Chrom referenced to the chromosomes, the Start and End columns indicated the start and end positions, while that Name indicated the name of cytogenetics Bands, finally, Group column contains informations associated to the Giemsa stain results.

Value

data.frame that contain the positions of cytogenetic bands with a chromosome of mouse.

Examples

data(mm10_cytoBandIdeo)
## maybe str(mm10_cytoBandIdeo) ; plot(mm10_cytoBandIdeo) ...

Example output

Loading required package: biomaRt
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb

chromPlot documentation built on Nov. 8, 2020, 5:12 p.m.