kibior: A Simple Data Management and Sharing Tool

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.

Package details

AuthorRégis Ongaro-Carcy [aut, cre, ctb] (<https://orcid.org/0000-0002-0091-8810>), Arnaud Droit [fnd]
Bioconductor views DataImport DataRepresentation ThirdPartyClient
MaintainerRégis Ongaro-Carcy <regis.ongaro-carcy2@crchudequebec.ulaval.ca>
LicenseGPL-2
Version0.1.1
URL https://github.com/regisoc/kibior
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("kibior")

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kibior documentation built on Jan. 28, 2021, 5:05 p.m.