SeqArray: Data Management of Large-scale Whole-genome Sequence Variant Calls

Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.

Package details

AuthorXiuwen Zheng [aut, cre], Stephanie Gogarten [aut], David Levine [ctb], Cathy Laurie [ctb]
Bioconductor views DataRepresentation Genetics Infrastructure Sequencing
MaintainerXiuwen Zheng <[email protected]>
LicenseGPL-3
Version1.22.3
URL http://github.com/zhengxwen/SeqArray
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SeqArray")

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SeqArray documentation built on Dec. 15, 2018, 6:01 p.m.