seqCheck: Data Integrity Checking

In SeqArray: Data management of large-scale whole-genome sequence variant calls

Description

Performs data integrity on a SeqArray GDS file.

Usage

seqCheck(gdsfile, verbose=TRUE)

Arguments

gdsfile	a SeqVarGDSClass object, or a file name
verbose	if TRUE, display information

Value

A list of the following components:

hash	a data.frame for hash checking, including algo for digest algorithms and ok for the checking states
dimension	a data.frame for checking the dimension of each variable, including ok for the checking states and info for the error messages

Author(s)

Xiuwen Zheng

Examples

# the GDS file
(gds.fn <- seqExampleFileName("gds"))

seqCheck(gds.fn)

SeqArray documentation built on Nov. 8, 2020, 5:08 p.m.