Files in SeqArray

Data management of large-scale whole-genome sequence variant calls

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/ConvToGDS.cpp

src/ReadByVariant.cpp

src/Index.cpp

src/Methods.cpp

src/samtools_ext.c

src/R_SeqArray.c

src/LinkSNPRelate.cpp

src/ConvVCF2GDS.cpp

src/vectorization.c

src/SeqArray.cpp

src/pkg_test.cpp

src/ReadBySample.cpp

src/vectorization.h

src/Makevars

src/ReadByUnit.cpp

src/FileMerge.cpp

src/Index.h

src/ReadByVariant.h

src/ConvGDS2VCF.cpp

src/GetData.cpp

src/ReadBySample.h

data/KG_P1_SampData.RData

R/Utilities.R R/Methods-SeqVarGDSClass.R R/UtilsMerge.R R/AllGenerics.R R/Internal.R R/Conversion.R R/ConvVCF2GDS.R R/asVCF.R R/Methods.R R/AddValue.R R/AllClasses.R R/UnitList.R R/Summary.R R/UtilsExport.R

vignettes/seqarray_workflow.svg

vignettes/seqarray_bib.bib

vignettes/SeqArray.Rmd vignettes/SeqArrayTutorial.Rmd

vignettes/benchmark_rand_samp.svg

vignettes/OverviewSlides.Rmd man/seqCheck.Rd man/seqAlleleFreq.Rd man/KG_P1_SampData.Rd man/seqSystem.Rd man/seqParallelSetup.Rd man/seqAddValue.Rd man/seqResetVariantID.Rd man/seqBlockApply.Rd man/seqNumAllele.Rd man/seqAsVCF.Rd man/seqVCF2GDS.Rd man/seqOptimize.Rd man/seqSummary.Rd man/seqOpen.Rd man/seqUnitFilterCond.Rd man/seqDelete.Rd man/seqUnitSlidingWindows.Rd man/seqVCF_Header.Rd man/seqGDS2VCF.Rd man/seqExampleFileName.Rd man/seqDigest.Rd man/seqRecompress.Rd man/seqTranspose.Rd man/SeqVarGDSClass-class.Rd man/seqExport.Rd man/seqSNP2GDS.Rd man/seqApply.Rd man/seqGetData.Rd man/seqClose.Rd man/seqGDS2SNP.Rd man/seqSetFilter.Rd man/seqStorageOption.Rd man/seqGetFilter.Rd man/seqUnitApply.Rd man/seqSetFilterCond.Rd man/SeqArray-package.Rd man/seqMissing.Rd man/seqParallel.Rd man/seqMerge.Rd man/seqVCF_SampID.Rd man/seqBED2GDS.Rd tests/test.R

inst/CITATION

inst/doc/SeqArrayTutorial.R

inst/doc/SeqArrayTutorial.html

inst/doc/SeqArray.R inst/doc/SeqArray.Rmd

inst/doc/SeqArray.html

inst/doc/OverviewSlides.html

inst/doc/SeqArrayTutorial.Rmd inst/doc/OverviewSlides.Rmd

inst/extdata/CEU_Exon.vcf.gz

inst/extdata/CEU_Exon.gds

inst/extdata/1KG_phase1_release_v3_chr22.gds

inst/unitTests/test_examples.R inst/unitTests/test_c.R inst/unitTests/test_asVCF.R inst/unitTests/test_utils.R inst/unitTests/test_cpp.R inst/unitTests/test_func.R

inst/unitTests/data/Valid.RData

SeqArray documentation built on Nov. 8, 2020, 5:08 p.m.