seqNumAllele: Number of alleles
In SeqArray: Data management of large-scale whole-genome sequence variant calls
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Returns the numbers of alleles for each site.
Usage
1
seqNumAllele(gdsfile)
Arguments
gdsfile
a SeqVarGDSClass object
Value
The numbers of alleles for each site.
Author(s)
Xiuwen Zheng
See Also
Examples
1
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# the GDS file
(gds.fn <- seqExampleFileName("gds"))
# display
f <- seqOpen(gds.fn)
table(seqNumAllele(f))
# close the GDS file
seqClose(f)
Example output
Loading required package: gdsfmt
[1] "/usr/lib/R/site-library/SeqArray/extdata/CEU_Exon.gds"
2 3
1346 2
SeqArray documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Returns the numbers of alleles for each site.
Usage
1 | seqNumAllele(gdsfile)
|
Arguments
gdsfile |
a |
Value
The numbers of alleles for each site.
Author(s)
Xiuwen Zheng
See Also
Examples
1 2 3 4 5 6 7 8 9 10 | # the GDS file
(gds.fn <- seqExampleFileName("gds"))
# display
f <- seqOpen(gds.fn)
table(seqNumAllele(f))
# close the GDS file
seqClose(f)
|
Example output
Loading required package: gdsfmt
[1] "/usr/lib/R/site-library/SeqArray/extdata/CEU_Exon.gds"
2 3
1346 2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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