AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Package details

AuthorJames Malone, Simon Jupp, Maryam Soleimani
Bioconductor views DataImport DataRepresentation DifferentialExpression GeneExpression GeneSetEnrichment Microarray
MaintainerSimon Jupp <>
LicenseApache License 2.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.