generef-class: Class '"generef"'

In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description

Class to store gene references, including the URI, name and experimental factors associated with the gene.

Extends

All reference classes extend and inherit methods from "envRefClass".

Fields

geneuri:

Object of class character the URI of the gene.

genelabel:

Object of class characterGene name.

geneensemblid:

Object of class character ENSEMBL ID of the gene, if available.

species:

Object of class character Species ID of the gene.

exfactoruris:

Object of class vector Exerimental factors associated to this gene.

Methods

mergeexfactoruris(value):

merge an experimental factor(s) into the list

getexfactoruris():

get the list of experimental factors for this gene

getspecies():

Get the species ID for this gene

setspecies(value):

Set the species ID for this gene

getensemblid():

Get the ENSEMBL ID for this gene.

setensemblid(value):

Set the ENSEMBL ID for this gene.

getgenelabel():

Get gene name.

setgenelabel(value):

Set gene name.

getgeneuri():

Get the URI for the gene.

setgeneuri(value):

Set the URI for the gene.

Author(s)

James Malone, Simon Jupp

Examples

showClass("generef")

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.